Translation of the MOGAMUN algorithm in Python as part of a biological network modeling course.
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Updated
Dec 7, 2021 - Python
Translation of the MOGAMUN algorithm in Python as part of a biological network modeling course.
Pathway Activity Analysis and Metabolite Annotation for Untargeted Metabolomics using Probabilistic Modeling
This is the backend service repository that makes Drugst.One work. Drugst.One is a plug-and-play solution to make your biomedical (web-)tool drug repurposing ready. With just three lines of code the plugin can be integrated into your website within a few minues of work.
This repository provides classic clustering algorithms and various internal cluster quality validation metrics and also visualization capabilities to analyse the clustering results
Webinar: Large-scale Biological Network Analysis and Visualization Using CyVerse
The BioNE is a new pipeline that integrates embedding results from different graph embedding methods, providing a more comprehensive knowledge of the network and therefore better performance on prediction tasks.
Converting KGML encoded KEGG pathways to the SIF file format
Converting SBGN-encoded pathways to the SIF file format
Converting SBGN encoded pathways to the SIF file format
Prospecting Optimal Pathways with PYthon: Tools for creating and exploring metabolic reaction networks.
MCRM: Mother Compact Recurrent Memory
MGN-Net: A novel Graph Neural Network for integrating heterogenous graph population derived from multiple sources.
Molecular interactions inference from single-cell multi-omics data
A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input gene list.
Explore biomolecular pathways in Reactome from the command-line or a Python script
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