Explore biomolecular pathways in Reactome from the command-line or a Python script
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Updated
Nov 19, 2023 - Python
Explore biomolecular pathways in Reactome from the command-line or a Python script
A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input gene list.
Molecular interactions inference from single-cell multi-omics data
MGN-Net: A novel Graph Neural Network for integrating heterogenous graph population derived from multiple sources.
MCRM: Mother Compact Recurrent Memory
Prospecting Optimal Pathways with PYthon: Tools for creating and exploring metabolic reaction networks.
The BioNE is a new pipeline that integrates embedding results from different graph embedding methods, providing a more comprehensive knowledge of the network and therefore better performance on prediction tasks.
Converting KGML encoded KEGG pathways to the SIF file format
Converting SBGN encoded pathways to the SIF file format
Converting SBGN-encoded pathways to the SIF file format
This repository provides classic clustering algorithms and various internal cluster quality validation metrics and also visualization capabilities to analyse the clustering results
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Repositório para apresentação de código desenvolvido pelo grupo 2 para a UC Algoritmos Avançados para a Bioinformática do Mestrado em Bioinformática, ano lectivo 23-24.
Pathway Activity Analysis and Metabolite Annotation for Untargeted Metabolomics using Probabilistic Modeling
Translation of the MOGAMUN algorithm in Python as part of a biological network modeling course.
This is the backend service repository that makes Drugst.One work. Drugst.One is a plug-and-play solution to make your biomedical (web-)tool drug repurposing ready. With just three lines of code the plugin can be integrated into your website within a few minues of work.
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