🪄📄 TOPICAL: TOPIC pages AutomagicaLly
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Updated
Jun 12, 2024 - Python
🪄📄 TOPICAL: TOPIC pages AutomagicaLly
A full-text article retrieval pipeline for biomedical literature.
A cost-sensitive BERT that handles the class imbalance for the task of biomedical NER.
Binary classifier to identify scientific publications reporting pharmacokinetic parameters estimated in vivo
BioNLP Workshop 2023 and Shared Tasks @ ACL 2023
[BioCreative VII] Track 5 - LitCovid track Multi-label topic classification for COVID-19 literature annotation
This code is to run MetaMap in parallel using Python.
MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)
This repository automatically requests and extracts abstract from PubMed.
[NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.
Biomedical wordlists (of drugs, genes, etc) for several text mining projects
Text mining cancer biomarkers for the CIVIC database
A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).
Challenge on Textual Inference and Question Entailment in the Medical Domain https://sites.google.com/view/mediqa2019
brat rapid annotation tool (brat) - for all your textual annotation needs
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