Official Implementation of SegFormer3D: an Efficient Transformer for 3D Medical Image Segmentation (CVPR2024)
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Updated
Jun 14, 2024 - Python
Official Implementation of SegFormer3D: an Efficient Transformer for 3D Medical Image Segmentation (CVPR2024)
Brain Tumor Segmentation Pipeline for BraTS Challenge
LHU-Net: A Light Hybrid U-Net for Cost-efficient, High-performance Volumetric Medical Image Segmentation
Multimodal Brain Tumor Segmentation Boosted by Monomodal Normal Brain Images
Official BraTS 2023 Segmentation Performance Metrics
Code for automated brain tumor segmentation from MRI scans using CNNs with attention mechanisms, deep supervision, and Swin-Transformers. Based on my Master's dissertation project at Brunel University, it features 3 deep learning models, showcasing integration of advanced techniques in medical image analysis.
Implementation of the Mean Teacher method for brain lesion segmentation based on DeepMedic, from paper published in IPMI 2019
Fully automatic brain tumour segmentation using Deep 3-D convolutional neural networks
Interactive Brain Tumor Segmentation with FocalClick and CDNet
[MIDL 2023] MMCFormer: Missing Modality Compensation Transformer for Brain Tumor Segmentation
Official Pytorch Code of KiU-Net for Image/3D Segmentation - MICCAI 2020 (Oral), IEEE TMI
[MICCAI 2022 Best Paper Finalist] Bayesian Pseudo Labels: Expectation Maximization for Robust and Efficient Semi Supervised Segmentation
Official and maintained implementation of the paper "OSS-Net: Memory Efficient High Resolution Semantic Segmentation of 3D Medical Data" [BMVC 2021].
Attention-Guided Version of 2D UNet for Automatic Brain Tumor Segmentation
We segmented the Brain tumor using Brats dataset and as we know it is in 3D format we used the slicing method in which we slice the images in 2D form according to its 3 axis and then giving the model for training then combining waits to segment brain tumor. We used UNET model for training our dataset.
Useful functions and pipelines for brain tumor segmentation.
Code for the paper : "Weakly supervised segmentation with cross-modality equivariant constraints", available at https://arxiv.org/pdf/2104.02488.pdf
Solution of the RSNA/ASNR/MICCAI Brain Tumor Segmentation (BraTS) Challenge 2021
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