Scalable and High Performance Variant Calling on Cluster Environments
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Updated
Feb 13, 2022 - Python
Scalable and High Performance Variant Calling on Cluster Environments
A Snakemake pipeline for copy number variant calling without normal tissue samples
The snakyVC pipeline is designed for efficiently and parallelly executing variant calling on next-generation sequencing (NGS) whole-genome datasets.
Small GATK alignment and variant calling pipeline using python
Parse pileup files, generate consensus fasta and calculate heteroplasmy per nucleotide
The second part of https://github.com/npanuhin/BIOCAD
Map and post-process your bams for SNP calling
The DKFZ alignment workflow plugin originally developed at the eilslabs
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