A Snakemake pipeline for copy number variant calling without normal tissue samples
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Updated
Jun 19, 2024 - Python
A Snakemake pipeline for copy number variant calling without normal tissue samples
The snakyVC pipeline is designed for efficiently and parallelly executing variant calling on next-generation sequencing (NGS) whole-genome datasets.
The DKFZ alignment workflow plugin originally developed at the eilslabs
Small GATK alignment and variant calling pipeline using python
Scalable and High Performance Variant Calling on Cluster Environments
The second part of https://github.com/npanuhin/BIOCAD
Map and post-process your bams for SNP calling
Parse pileup files, generate consensus fasta and calculate heteroplasmy per nucleotide
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