Force field parameters and supplementary scripts for the "A coarse-grained model for DNA origami" paper by R. Reshetnikov, A. Stolyarova, A. Zalevsky et. al.
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Updated
May 4, 2021 - Python
Force field parameters and supplementary scripts for the "A coarse-grained model for DNA origami" paper by R. Reshetnikov, A. Stolyarova, A. Zalevsky et. al.
Swarm-CG: Automatic Parametrization of Bonded Terms in MARTINI-based Coarse-Grained Models of Simple to Complex Molecules via Fuzzy Self-Tuning Particle Swarm Optimization
Differentiable molecular simulation of proteins with a coarse-grained potential
Analyze two-component nanoparticle properties for classical molecular dynamics simulations
Massively parallel hybrid particle-field molecular dynamics in Python.
COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3
A toolkit for working with coarse-grain systems
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