Creates a construct developed by the Niles Lab at MIT, designed to deliver a 3' UTR post-transcriptional regulatory element payload to a specific given gene in Plasmodium falciparum.
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Updated
Jun 20, 2024 - Python
Creates a construct developed by the Niles Lab at MIT, designed to deliver a 3' UTR post-transcriptional regulatory element payload to a specific given gene in Plasmodium falciparum.
ALLEGRO: An Algorithm Leveraging Linear Programing to Enhance Guide RNA Optimization
Comprehensive design of CRISPR gRNAs for nucleases and base editors
A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.
A gRNA database generation tool.
Visualization of CRISPR guide RNAs (gRNAs)
On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs
Shiny interface for CRISPR gRNAs designed with the crisprVerse
CRISPR, faster, better – The Crackling method for whole-genome target detection
Fork of Azimuth (Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency), updated to work with Python 3.10+
⛓️ Automating construction of oligo library sequences for oligo array synthesis.
Tutorials for the crisprVerse
Base functions and classes for CRISPR gRNA design
Useful human and mouse data for the crisprVerse ecosystem
Collection of R packages that work in harmony for CRISPR gRNA design
BWA-based alignment of CRISPR gRNA spacer sequences
Bowtie-based alignment of CRISPR gRNA spacer sequences
A guideRNA design tool for the modern era.
Pre-trained models for the crisprScore package
CRISPR Guide RNA Designer
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