models and main code to reproduce the results of the research articule "single molecule switches and oscillators"
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Updated
Dec 7, 2017 - R
models and main code to reproduce the results of the research articule "single molecule switches and oscillators"
Mathematical modeling of neurons and neuronal activity
numerical solver for first order ODE systems via Euler and RK4 schemes
Forwards euler, backwards euler, and trapezoidal ODE solver for harmonic oscillators. Done for complexity explorer
Enhancing Boolean networks with continuous logical operators and edge tuning: smoothing simulations
Dynamical analysis of minimnal networks based on approximate majority algorithm (AM)
Code for the paper "System Identification with Copula Entropy"
Shiny apps to teach simple dynamical models in biology with an emphasis on oscillations
Dynamical System created from mapping of curvature and torsion of image of parametric planar curve when stereographically projected to the unit sphere.
Estimating route conditional travel time and its uncertainty.
Code for the paper "An empirical Bayes approach to estimating dynamic models of co-regulated gene expression" (published in Data Science in Science, 2023)
Code for the paper "Identifying time lag in dynamical systems with copula entropy based transfer entropy"
TimeCycle is a topology inspired method for the detection of cycling transcripts in circadian biology research.
IsoSim: stoichiometric, kinetic and isotopic modeling of metabolic systems
R package for dynamic bioenergetic modeling of coral-Symbiodinium symbioses
The dsmodels domain-specific-language for visualizing dynamical systems in R.
Development version of phaseR, an R package for phase plane analysis of one- and two-dimensional autonomous ODE systems
R package for statistical inference using partially observed Markov processes
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