R package for statistical inference using partially observed Markov processes
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Updated
May 24, 2024 - R
R package for statistical inference using partially observed Markov processes
Development version of phaseR, an R package for phase plane analysis of one- and two-dimensional autonomous ODE systems
IsoSim: stoichiometric, kinetic and isotopic modeling of metabolic systems
Code for the paper "An empirical Bayes approach to estimating dynamic models of co-regulated gene expression" (published in Data Science in Science, 2023)
Enhancing Boolean networks with continuous logical operators and edge tuning: smoothing simulations
Dynamical System created from mapping of curvature and torsion of image of parametric planar curve when stereographically projected to the unit sphere.
Estimating route conditional travel time and its uncertainty.
Shiny apps to teach simple dynamical models in biology with an emphasis on oscillations
Code for the paper "System Identification with Copula Entropy"
models and main code to reproduce the results of the research articule "single molecule switches and oscillators"
Mathematical modeling of neurons and neuronal activity
numerical solver for first order ODE systems via Euler and RK4 schemes
R package for dynamic bioenergetic modeling of coral-Symbiodinium symbioses
TimeCycle is a topology inspired method for the detection of cycling transcripts in circadian biology research.
Forwards euler, backwards euler, and trapezoidal ODE solver for harmonic oscillators. Done for complexity explorer
Code for the paper "Identifying time lag in dynamical systems with copula entropy based transfer entropy"
Dynamical analysis of minimnal networks based on approximate majority algorithm (AM)
The dsmodels domain-specific-language for visualizing dynamical systems in R.
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