gatk4
Here are 12 public repositories matching this topic...
Map and post-process your bams for SNP calling
-
Updated
Mar 10, 2021 - Python
An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM files
-
Updated
Sep 17, 2021 - Python
Small GATK alignment and variant calling pipeline using python
-
Updated
Jul 18, 2022 - Python
Pipeline for calling and analyzing variants from RNA-Seq data
-
Updated
Nov 7, 2022 - Python
A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
-
Updated
Jan 13, 2023 - Python
Snakemake pipeline for variant calling using GATK
-
Updated
Mar 3, 2023 - Python
A Snakemake workflow for variant calling using GATK4 best practices
-
Updated
Feb 2, 2024 - Python
The snakyVC pipeline is designed for efficiently and parallelly executing variant calling on next-generation sequencing (NGS) whole-genome datasets.
-
Updated
Apr 7, 2024 - Python
Snakemake Pipeline for the Analyses of ChIP-seq data in Cancer samples
-
Updated
Apr 16, 2024 - Python
Improve this page
Add a description, image, and links to the gatk4 topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the gatk4 topic, visit your repo's landing page and select "manage topics."