🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
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Updated
Jun 1, 2024 - Python
🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
Earl Grey: A fully automated TE curation and annotation pipeline
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
tairaccession python package for interaction with tair and analyzing arabidopsis genome.
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
from protein alignments to deep learning preparatory.
Eukaryotic Genome Annotation Pipeline
High-precision TE Annotator
genome annotation analyzer for the microbiome analysis
a miniprot alignments analyzer for protein alignments to draft genomes.
transdecoder predictions analyzer for pygenomeviz, mauve.
stitching coding regions from exon alignments for the protein to genome alignments.
plotting and summary information tools for the mRNA proteome to genome alignments.
plotting and summary tools for the protein to genome alignments for genome annotations.
intergenic region analyzer from protein alignments to draft genomes.
protein-annotator python package for analyzing protein alignments to draft genomes.
ease of access gff files from tair for reading tair ids.
analyzing bacterial genome based ontologies and phylogenomics informativeness
genome and transcriptome fraction fetch post alignment.
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