Can deep learning improve genomic prediction of complex human traits? by Pau Bellot, Gustavo de los Campos, Miguel Pérez-Enciso, Genetics
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Updated
Jun 17, 2024 - Python
Can deep learning improve genomic prediction of complex human traits? by Pau Bellot, Gustavo de los Campos, Miguel Pérez-Enciso, Genetics
Trait BLUP, a Feature Selection Package for Genomic Prediction
Using machine learning to integrate genetic and environmental data to model genotype-by-environment interactions
Some deep learning genomics projects
BAMdelbee is a novel tool for discovering homozygous deletions in Whole-exome-sequencing (WES) and whole-genome-sequencing (WGS) data. WES or WGS samples generated by the same method produce BAM files with similar alignment coverage across the genome. BAMdelbee locates homozygous deletions by pinpointing regions covered in all samples but the on…
Gradient Boosting Regression (GBR, https://github.com/scikit-learn/scikit-learn) model for genomic predictions
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