Population-scale genotyping using pangenome graphs
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Updated
Feb 29, 2024 - C++
Population-scale genotyping using pangenome graphs
Rare variant test software for next generation sequencing data
Main application is twofold: first to convert genotype SNP data into formats of different imputation tools like PLINK MACH, IMPUTE, BEAGLE and BIMBBAM, second to transform imputed data into different file formats like PLINK, HAPLOVIEW, EIGENSOFT and SNPTEST.
Compute haplotype and genotype probabilities, and perform imputation, in arbitrary pedigrees, including cases under possible observational errors.
summarize and visualize the genotypes categories per sample in a VCF file
Demonstration of an Artificial Evolution process on a fleet of Boid ships collecting gold using Unreal Engine 4.
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