Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.
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Updated
Jan 10, 2022 - Python
Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.
IDseq infectious disease command-line interface
Custom tools to QA new releases of gsnap, rapsearch, STAR, or any other bioinformatics tool used in the IDseq pipeline.
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