Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
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Updated
May 8, 2023 - R
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
marker-based purification of cell types from single-cell RNA-seq datasets
Accurate and fast cell marker gene identification with COSG
Marker gene profile estimation method used in NeuroExpresso manuscript
Processing NEON soil microbe marker gene sequence data into ASV tables.
The goal of LRcell is to identify specific sub-cell types that drives the changes observed in a bulk RNA-seq differential gene expression experiment. To achieve this, LRcell utilizes sets of cell marker genes acquired from single-cell RNA-sequencing (scRNA-seq) as indicators for various cell types in the tissue of interest. Next, for each cell t…
Permutation testing in single cell analysis
scCTS: identifying the cell type specific marker genes from population-level single-cell RNA-seq
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