Data converter from a tab-separated text file to a QuiXML file to be used in QuiXoT.
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Updated
May 24, 2017 - C#
Data converter from a tab-separated text file to a QuiXML file to be used in QuiXoT.
A software for importing spectral data from Thermo RAW files to binStack format usable by QuiXoT.
A SEQUEST protein identification validator program created to calculate the probability of random peptide matching and the FDR when a large collection of MS2 spectra is searched against a database using SEQUEST.
Algorithm for quantifying the homogeneity of species isolated for fragmentation in LC-MS/MS analyses using data directed acquisition (DDA).
Quantification and statistical analysis of quantitative proteomics experiments.
Class for reading Protein files, specifically .fasta files and certain tab-delimited formats
A lightweight multi-purpose program to operate with XML files. Designed especially to manage large QuiXML files.
Software for the validation of citrullinated peptides
Program that implements a protein parsimony algorithm for grouping proteins with similar peptides.
Utility for generating plots of the mass measurement errors before and after processing with mzRefinery
Proteomics development kit focused on top-down analysis
The AScore program can process first-hits or synopsis files from MS-GF+, SEQUEST, or X!Tandem to compute confidence scores for the position of phosphorylated residues.
Converts a MS-GF+ .tsv search result file or an X!Tandem results file (XML format) into a series of tab-delimited text files, summarizing the results. It also supports results files from MaxQuant, MSAlign, TopPIC, MODa, MODPlus, and MSPathFinder, along with SEQUEST Synopsis/First Hits files.
A software part of the QuiXoT software package used to analyse protein quantifications performed in the MS1-spectra (such as 18O/16O or SILAC).
The PeptideListToXML application reads a tab-delimited text file created by the Peptide Hit Results Processor (PHRP) and creates a PepXML with the appropriate information.
Reads a protein FASTA file and filters the proteins by organism name, protein name, or taxonomy ID to create a new, filtered file.
Parses a FASTA file (with protein name and sequence information) to check for valid text. Also returns protein and residue stats.
Merges the contents of a tab-delimited text file with peptide search results (e.g. from X!Tandem or MS-GF+) with the corresponding MASIC results files, appending the relevant MASIC stats for each PSM. Also supports reporter ion abundances.
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