Bayesian modelling of DNA methylation heterogeneity at single-cell resolution
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Updated
Jan 26, 2024 - R
Bayesian modelling of DNA methylation heterogeneity at single-cell resolution
Regional Association of Methylation variability with the Exposome and geNome (RAMEN) is an R package whose goal is to identify Variable Methylated Regions (VMRs) in microarray DNA methylation data. Additionally, using Genotype (G) and Environmental (E) data, it can identify which G, E, G+E or GxE model better explains this variability.
This package provides Illumina Mouse Methylation Array Manifest (12.v1, Genome Build mm10) compatible with minfi.
DNA methylation analysis pipeline for reduced representation bissulfite sequencing data
This package provides Illumina Mouse Methylation Array Annotation (12.v1, Genome Build mm10) compatible with minfi.
Persimmon: DMR Finder
This repository contains the project of the DNA/RNA Dynamics course of the MSc Bioinformatics at the University of Bologna. The project is about the analysis of methylation data generated from Illumina HumanMethylation450K Beadchip.
This pipeline is designed for the analysis of DNA methylation data generated from the Illumina HumanMethylation450 BeadChip platform.
Differentially methylated regions analysis
Small minfi wrapper to convert IDAT files to beta values.
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