Determine the sequence type of specific transposable elements in bacterial isolates.
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Updated
Oct 13, 2020 - Java
Determine the sequence type of specific transposable elements in bacterial isolates.
Sequence Analysis Pipeline for the IRIDA Platform for Viral Genomes
Call core SNPs agains a reference genome for a set of bacterial isolates, and build a phylogenetic tree based on the core-genome SNP information.
An open, platform-independent software toolkit for storage and interpretation of sequence data, implemented in Java.
Determine the MLST sequence type for samples using PubMLST schemes in the IRIDA system
Detect the presence of specific resistance genes in a sample using the IRIDA system
Estimate the relative abundance of sequence reads originating from different species in a sample using the IRIDA system
A Java Desktop application with a graphical user interface for the discovery of colinear syntenic blocks across thousands microbial genomes
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