Get microbial sequence data easier and faster
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Updated
Nov 7, 2019 - Perl
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microbial-genomics
Here are 4 public repositories matching this topic...
Collection of scripts for bacterial genomics
science
unix
opensource
bioinformatics
annotation
genomics
perl
ngs
sequencing
computational-biology
microbial-genomics
blast
microbiology
mlst
bioperl
scripts-collection
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Updated
Dec 6, 2019 - Perl
1.Partial Scripts to process sequence clusters from 16000 microbial genomes to find orthologous protein clusters, using the most representative sequence per cluster 2. Find fold distribution across protein hits from SCOP and ASTRAL 3. Fnd most significant structural hits and perform structure alignment 4. Eliminate LGT in sequence clusters and r…
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Updated
Oct 19, 2021 - Perl
A Snakemake workflow for microbial pangenomics analyses.
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Updated
Jun 29, 2023 - Perl
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