A Snakemake workflow for microbial pangenomics analyses.
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Updated
Jun 29, 2023 - Perl
A Snakemake workflow for microbial pangenomics analyses.
1.Partial Scripts to process sequence clusters from 16000 microbial genomes to find orthologous protein clusters, using the most representative sequence per cluster 2. Find fold distribution across protein hits from SCOP and ASTRAL 3. Fnd most significant structural hits and perform structure alignment 4. Eliminate LGT in sequence clusters and r…
Collection of scripts for bacterial genomics
Get microbial sequence data easier and faster
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