angelovangel / nxf-fastqc Star 11 Code Issues Pull requests A simple fastp-MultiQC nextflow pipeline multiqc fastq-files ngs-pipeline fastqc nextflow-pipelines Updated Feb 2, 2023 Nextflow
nf-core / hgtseq Star 19 Code Issues Pull requests A pipeline to investigate horizontal gene transfer from NGS data taxonomies workflow pipeline nextflow ngs tidyverse multiqc samtools bwa-mem horizontal-gene-transfer genomics-visualization fastqc nf-core krona kraken2 bwa-mem2 ggbio Updated May 9, 2024 Nextflow
Sydney-Informatics-Hub / bamQC-nf Star 0 Code Issues Pull requests Report summary statistics relating to quality of bam files with Nextflow bioinformatics genomics nextflow ngs alignment multiqc sambamba bam samtools qualimap mosdepth australian-biocommons Updated Dec 6, 2022 Nextflow
mahesh-panchal / nextflow-fastqc-quarto Star 0 Code Issues Pull requests Using Quarto within Nextflow to make a MultiQC report nextflow multiqc quarto Updated Feb 22, 2024 Nextflow
isugifNF / RNAseq Star 0 Code Issues Pull requests RNAseq from fastq reads to gene counts/quantification nextflow multiqc salmon kallisto gsnap fastqc Updated Aug 13, 2021 Nextflow