snakemake pipeline based on nanopolish
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Updated
Feb 6, 2020 - Python
snakemake pipeline based on nanopolish
This is just small command line pipeline to simplify going from ONT Unbasecalled data using Guppy to Assembly using Flye, all of the tools are existing tools.
Analysis of sequencing error profile for long read data.
Pipeline to assemble oxford nanopore long sequencing reads and perform variant calling with long and short reads
HIV-64148, an integration of multiple long-read genome assemblers with a pipeline for analysis of HIV-1 genomic data from Oxford Nanopore Sequencing Technology or PacBio Real-Time (SMRT) Sequencing technology.
Single cell Nanopore sequencing data for Genotype and Phenotype
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