Snakemake pipeline to analyze retrotransposable element 'omics data.
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Updated
Jun 6, 2024 - R
Snakemake pipeline to analyze retrotransposable element 'omics data.
Reference-guided transcript discovery and quantification for long read RNA-Seq data
An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads
An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions
Surveillance of wastewater for SARS-CoV-2 detection
DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing
Benchmark analysis of algorithms for determining full-length mRNA isoforms by Nanopore RNA-seq data.
(long read) fastq input to final report
The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, clusters reads and produces a consensus sequence for each cluster after multiple sequence alignment.
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