rnafold

Here are 5 public repositories matching this topic...

jaswindersingh2 / RNAcmap

A Fully Automatic Method for Predicting Contact Maps of RNAs by Evolutionary Coupling Analysis

gremlin evolutionary-couplings msa blastn rnafold infernal spot-rna canonical-base-pairs pseudoknot-base-pairs direct-coupling-analysis rna-seconday-structure plmc mf-dca end-to-end-pipeline non-canonical-base-pairs tertiary-interactions rna-contact-prediction

Updated Nov 6, 2023
Python

drivenbyentropy / rnafold4j

Star

RNAFold4J - A java port of RNAFold from the ViennaRNA package

java bioinformatics folding rnafold

Updated Aug 10, 2018
Java

SouthernCD / miRNABlast

Star

Search genome loci using the miRNA sequence

blast mirna rnafold

Updated May 20, 2022
Python

dmancilla85 / laslo

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Multi-threaded application that searches for hairpin structures in cDNA / mRNA sequences (FASTA or GenBank) with specific consensus sequences in the loop.

java bioinformatics internationalization multithreading interfaces biojava rnafold ushuffle

Updated Mar 31, 2020
Java

dmancilla85 / java-mvn-laslo

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Maven project for the bioinformatic application LoopMatcher (aka LASLO).

java maven rna-structure-prediction biojava rnafold bioinformatics-tool

Updated May 6, 2024
Java

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rnafold

Here are 5 public repositories matching this topic...

jaswindersingh2 / RNAcmap

drivenbyentropy / rnafold4j

SouthernCD / miRNABlast

dmancilla85 / laslo

dmancilla85 / java-mvn-laslo

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