SARS-CoV-2 Genome Assembler
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Updated
Apr 11, 2023 - Shell
SARS-CoV-2 Genome Assembler
VIPER is a user-friendly software for assembling and identifying viral genomes (currently SARS-CoV-2, Dengue, and Influenza), from Illumina sequencing data generated through genomic surveillance.
Official implementation of article "Including explicitly treated interfacial water molecules improved the free energy calculation for the binding of SARS-CoV-2 spike RBD and antibodies".
Viral genome assembly pipeline for WGS using ONT
🏥 StopCorona Project
Large scale, in silico interaction analyses of SARS-CoV-2 nucleocapsid protein variants against human cytokines.
Bioinformatic pipeline for SARS-CoV-2 sequence analysis
An analysis script routine to assess if samples that were prepared with Lexogen's barcoded targeted QuantSeq Flex library preparation contain copies of the SARS-CoV-2 virus.
Sars-CoV-2 Lineage Determination exercise for the course Analytical Methods in Cancer Genomics 2023
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