Bulk RNA-seq analytical pipeline, including using Snakemake to run main steps such as Kallisto read mapping, QC, Principal Component Analysis (PCA), and other downstream analysis.
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Updated
Feb 16, 2022 - HTML
Bulk RNA-seq analytical pipeline, including using Snakemake to run main steps such as Kallisto read mapping, QC, Principal Component Analysis (PCA), and other downstream analysis.
A simple Snakemake workflow to perform network analyses using the Python Geneset Network Analysis (PyGNA) package.
The ENCODE-DCC demo workflow in Snakemake (under development)
Repository that hosts the course materials for the 2017 edition of Programming Practices for Research in Economics at the University of Zurich
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