State-space models for statistical mortality projections
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Updated
Jul 15, 2022 - R
State-space models for statistical mortality projections
Modeling the COVID-19 Infection Rates by Regime Switching Unobserved Components Models
Bayesian State-Space Modeling of Mouse-Tracking Experiments via Stan
Create Multivariate Autoregressive State-Space Models with the MARSS R package
Himes Boor, G.K., T.L. McGuire, A.J. Warlick, R.L. Taylor, S.J. Converse, J.R. McClung, A.D. Stephens. 2022. Estimating reproductive rates and juvenile survival when offspring ages are uncertain: a novel multievent mark-recapture model applied to an endangered beluga whale population. Methods in Ecology and Evolution
a helper package for pomp
Zipkin, E.F., Sillett, T.S., Grant, E.H.C., Chandler, R.B., and Royle, J.A. (2014) Inferences from count data using multi-state population models: a comparison to capture-recapture approaches. Ecology and Evolution. 4: 417-426.
An age-based state-space stock assessment model for the stock of American plaice on the Grand Bank of Newfoundland.
R package pmhtutorial available from CRAN.
An R package for fitting state-space models to repeated measures of multiple individuals with covariates
Source code and data for the tutorial: "Getting started with particle Metropolis-Hastings for inference in nonlinear models"
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