ukbiobank
Here are 33 public repositories matching this topic...
Graph saliency maps through spectral convolutional networks for brain mapping
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Sep 25, 2018 - Python
A tool for identifying patients in UK biobank given the definition of disease phenotypes (icd10, icd9, opcs or cancer histology).
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Oct 12, 2018 - R
Command line tool written in c++ for easily extracting light and temperature data from Axivity AX3 accelerometers used in the UKBiobank
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Feb 13, 2019 - C++
MultiVariate Polygenic Mixture Model
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Apr 4, 2020 - R
Create binary traits for UKbio using ICD/OPER/medication/self reports/age of diagnosis/visit-dates etc). The current output includes variables on history, study visit, future, time-to-first-event, episode-duration. this is a starting point to construct your favorite trait in ukb. The code was written on the go, so not super clean code..
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Apr 29, 2020 - R
Predicting risky behavior in structural brain volume using the UK Biobank
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Jun 5, 2020 - Python
Rare protein-altering variants in ANGPTL7 lower intraocular pressure and protect against glaucoma
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Jul 14, 2020 - Jupyter Notebook
Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank
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Feb 19, 2021
Polygenic risk modeling with latent trait-related genetic components
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Feb 23, 2021 - Jupyter Notebook
Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits
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Jun 2, 2021 - Jupyter Notebook
Explore SNVs associated with any of UK BioBank Phenotypes, results were made publicly available by: http://www.nealelab.is/uk-biobank
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Sep 10, 2021 - R
🫀 Code for "Neural network-based integration of polygenic and clinical information: Development and validation of a prediction model for 10 year risk of major adverse cardiac events in the UK Biobank cohort" 🫀
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Feb 1, 2022 - Jupyter Notebook
Tools for preprocessing, QC, and preliminary analyses from raw UK BioBank data
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Aug 5, 2022 - Jupyter Notebook
Data management helper code for the UK Biobank.
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Sep 16, 2022 - Shell
Python implementation of POPDx - Predictions for unseen, rare, and common labels.
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Apr 6, 2023 - Python
Tofu is a Python tool for generating synthetic UK Biobank data.
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Jul 25, 2023 - Python
Preparatory scripts for BIDS tabular phenotypic data in large neuroimaging datasets.
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Aug 1, 2023 - Python
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