Single Cell RNA-seq UMI Filtering Facilitator
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Updated
Mar 28, 2024 - R
Single Cell RNA-seq UMI Filtering Facilitator
Single Cell RNA-seq UMI Filtering Facilitator
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
Documents and scripts for analysis of oligonucleotide synthesis errors.
R-package to analyse data from the immuno-detection by sequencing (ID-seq) technology.
A framework implementing a new proposed method for UMI deduplication and reads correction. The method works at nucleotide level, taking into account the frequency and the mean quality of each base.
GPSeq sequencing data analysis pipeline
Single Cell RNA-seq UMI Filtering Facilitator
The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, clusters reads and produces a consensus sequence for each cluster after multiple sequence alignment.
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