A collection of web tools for biologists
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Updated
Jul 30, 2017 - Python
A collection of web tools for biologists
A flexible variant annotator written in Python
a core part of the MiModD package for use as a library
Manuscript data and code repository
implementing mutable structs and multiple dispatch over the junction annotations.
A repository for all code related to my masters project
Workflow for biological validation of germline SNP and indel variant datasets.
Calculate SMD and Hamming and Jaccard distances between each pair of samples in a set of variant files.
Novel mutations are identified in leukemia through variant analysis.
Bioinformatics pipelines developed while working at the dept of Obs & Gynae
Tools for analyzing UMIErrorCorrect output
Skeleton for NGS pipeline, now backbone of OVAS project
bcftools for dealing with bcf files.
Repository for variant calling utilizing bioinformatics tools and databases
Management flow using PBS system to analyze sequencing data from Illumina Novaseq6000
R package containing a R Shiny app for somatic genomic variants interpretation and a tool suite to deal with an underlying local structured database.
a workflow for combining variant calls from SNV analyses done with different callers
profiling variants for the pangenes alignments
R Shiny app for germline genomic variants interpretation. The tool suite to deal with the underlying local structured database is provided here : https://github.com/clbenoit/GermlineVarDBTools
A Latch Bio workflow to call DNA sequence variants
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