@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

Pinned repositories

  1. miso-lims

    Forked from TGAC/miso-lims

    MISO: An open-source LIMS for NGS sequencing centres, now with detailed samples

    Java 9 6

  2. niassa

    Bioinformatics workflow engine and analysis provenance system

    Java 4 1

  3. shesmu

    Decision-driven action launching system

    Java 4 1

  4. nabu

    QC tracking for files via a web service

    JavaScript

  5. xenoclassify

    A tool for classifiying short-read sequencing data from xenograft samples.

    Python 1

  6. debarcer

    Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes

    Python 3 2

  • Host the website for Niassa

    HTML 1 GPL-3.0 Updated Oct 22, 2018
  • Decision-driven action launching system

    Java 4 1 MIT Updated Oct 22, 2018
  • MISO: An open-source LIMS for NGS sequencing centres, now with detailed samples

    Java 9 40 GPL-3.0 Updated Oct 22, 2018
  • A LIMS abstraction layer to provide generalized LIMS access via a web service.

    JavaScript GPL-3.0 Updated Oct 22, 2018
  • Reports based on data from Pinery

    Java 1 LGPL-3.0 Updated Oct 22, 2018
  • Bioinformatics workflow engine and analysis provenance system

    Java 4 1 GPL-3.0 Updated Oct 22, 2018
  • SeqWare workflow for Illumina's bcl2fastq

    Java Updated Oct 22, 2018
  • Inventory Tracking Web App

    Java Updated Oct 19, 2018
  • Provenance API web service

    Java 1 GPL-3.0 Updated Oct 18, 2018
  • Java library for creating standard status pages for web servers without real UIs

    Java Updated Oct 18, 2018
  • Updated Oct 16, 2018
  • Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes

    Python 3 2 MIT Updated Oct 4, 2018
  • Java Updated Oct 2, 2018
  • JavaScript MIT Updated Sep 28, 2018
  • SeqWare-compatibile workflow and decider for BWA and BWA mem

    Java Updated Sep 26, 2018
  • Updated Sep 24, 2018
  • Open source utilities for working with SeqWare/Niassa

    Java 1 GPL-3.0 Updated Sep 24, 2018
  • Java Updated Sep 24, 2018
  • Java Updated Sep 20, 2018
  • Python Updated Sep 18, 2018
  • QC tracking for files via a web service

    JavaScript MIT Updated Sep 17, 2018
  • OICR documentation for MISO

    Ruby 2 5 MIT Updated Sep 17, 2018
  • Java Updated Aug 29, 2018
  • MultiQC

    Forked from ewels/MultiQC

    Aggregate results from bioinformatics analyses across many samples into a single report.

    Python 215 GPL-3.0 Updated Aug 23, 2018
  • A Java API for LIMS and analysis metadata

    Java GPL-3.0 Updated Aug 8, 2018
  • Perl scripts for generating quality control stats from BAM files

    Perl GPL-2.0 Updated Jul 25, 2018
  • Config files for setting up new developers in GSI

    MIT Updated Jul 24, 2018
  • Java Updated Jul 19, 2018
  • Updated Jun 14, 2018
  • Perl Updated May 29, 2018
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