An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
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Updated
May 21, 2024 - R
An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
An R package for summarizing and visualizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies generated by STAARpipeline
The tutorial for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary
An app for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline in UK Biobank RAP
cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis
An app for automatically functionally annotating the variants of whole-genome/whole-exome sequencing (WGS/WES) studies and integrating the functional annotations with the genotype data using FAVORannotator in UK Biobank RAP
An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
ABBA-BABA test conducted on Saccharomyces cerevisiae strains using whole-genome alignment.
An R package for performing MultiSTAAR procedure in whole-genome sequencing studies
Data and code repository for study aiming to understand ESBL carriage in Blantyre, Malawi
Accurate and robust inference of genetic ancestry from cancer-derived molecular data across genomic platforms
An app for summarizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies in UK Biobank RAP
An app for summarizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies in UK Biobank RAP
Investigate the role of mtDNA in the sex determination of freshwater mussels with doubly uniparental mitochondrial inheritance. Scripts for DESeq2, WGCNA, GSEA, AlphaFold/AlphaPulldown, and mt-sncRNA validation.
GREMLIN: Genomic REarrangements by Machine Learning-based INspection
Analysis and plotting functions for structural variant breakpoint data
A complete Snakemake pipeline for detecting allele specific expression in RNA-seq
Exploratory analysis for donor-recipient whole genome sequences
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