Installation problem with CMake #265

chialikuo · 2016-05-01T15:58:59Z

I recently installed torch and cunn on my desktop running Ubuntu 15.10, which had cuda 7.5 installed. Everything went smoothly except that I had to first downgrade GCC to version 4.9.

A couple days ago, I was trying to install torch on my laptop with Ubuntu 16.04 just installed. Using GCC 4.9, I was able to install cuda 7.5 and torch. However, when I was trying to install cunn with command luarocks install cunn, it failed with the following error message:

Cloning into 'cunn'...
-- The C compiler identification is GNU 4.9.3
-- The CXX compiler identification is GNU 4.9.3
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Torch7 in /home/kuo/torch/install
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Found CUDA: /usr (found suitable version "7.5", minimum required is "6.5") 
-- Compiling for CUDA architecture: 5.2
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/luarocks_cunn-scm-1-9819/cunn/build
[  1%] Building NVCC (Device) object lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_DistKLDivCriterion.cu.o
[  3%] Building NVCC (Device) object lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_SpatialConvolutionMM.cu.o
[  5%] Building NVCC (Device) object lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_AbsCriterion.cu.o
[  7%] Building NVCC (Device) object lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_LookupTable.cu.o
[  9%] Building NVCC (Device) object lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_TemporalMaxPooling.cu.o
[ 11%] Building NVCC (Device) object lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_LogSigmoid.cu.o
[ 13%] Building NVCC (Device) object lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_HardTanh.cu.o
[ 15%] Building NVCC (Device) object lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_MSECriterion.cu.o
CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THStorage.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THStorageCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCStorage.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCStorageCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensor.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorRandom.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorMath.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorConv.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorLapack.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCTensor.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCTensorCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THStorage.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THStorageCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCStorage.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCStorageCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensor.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorRandom.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorMath.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorConv.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorLapack.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCTensor.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCTensorCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THStorage.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THStorageCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCStorage.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCStorageCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensor.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorRandom.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorMath.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorConv.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorLapack.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCTensor.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCTensorCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THStorage.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THStorageCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCStorage.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCStorageCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensor.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorRandom.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorMath.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorConv.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorLapack.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCTensor.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCTensorCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THStorage.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THStorageCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCStorage.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCStorageCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensor.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorRandom.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorMath.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorConv.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorLapack.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCTensor.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCTensorCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THStorage.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THStorageCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCStorage.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCStorageCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensor.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorRandom.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorMath.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorConv.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorLapack.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCTensor.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCTensorCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THStorage.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THStorageCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCStorage.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCStorageCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensor.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorRandom.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorMath.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorConv.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorLapack.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCTensor.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCTensorCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THStorage.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THStorageCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCStorage.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCStorageCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensor.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorCopy.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorRandom.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorMath.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorConv.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THTensorLapack.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCTensor.h


CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
   Removing non-existent dependency file: generic/THCTensorCopy.h


/usr/include/string.h: In function ‘void* __mempcpy_inline(void*, const void*, size_t)’:
/usr/include/string.h:652:42: error: ‘memcpy’ was not declared in this scope
   return (char *) memcpy (__dest, __src, __n) + __n;
                                          ^
/usr/include/string.h: In function ‘void* __mempcpy_inline(void*, const void*, size_t)’:
/usr/include/string.h:652:42: error: ‘memcpy’ was not declared in this scope
   return (char *) memcpy (__dest, __src, __n) + __n;
                                          ^
CMake Error at THCUNN_generated_TemporalMaxPooling.cu.o.cmake:266 (message):
  Error generating file
  /tmp/luarocks_cunn-scm-1-9819/cunn/build/lib/THCUNN/CMakeFiles/THCUNN.dir//./THCUNN_generated_TemporalMaxPooling.cu.o


lib/THCUNN/CMakeFiles/THCUNN.dir/build.make:84: recipe for target 'lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_TemporalMaxPooling.cu.o' failed
make[2]: *** [lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_TemporalMaxPooling.cu.o] Error 1
make[2]: *** Waiting for unfinished jobs....
CMake Error at THCUNN_generated_SpatialConvolutionMM.cu.o.cmake:266 (message):
  Error generating file
  /tmp/luarocks_cunn-scm-1-9819/cunn/build/lib/THCUNN/CMakeFiles/THCUNN.dir//./THCUNN_generated_SpatialConvolutionMM.cu.o


lib/THCUNN/CMakeFiles/THCUNN.dir/build.make:91: recipe for target 'lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_SpatialConvolutionMM.cu.o' failed
make[2]: *** [lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_SpatialConvolutionMM.cu.o] Error 1
/usr/include/string.h: In function ‘void* __mempcpy_inline(void*, const void*, size_t)’:
/usr/include/string.h:652:42: error: ‘memcpy’ was not declared in this scope
   return (char *) memcpy (__dest, __src, __n) + __n;
                                          ^
CMake Error at THCUNN_generated_HardTanh.cu.o.cmake:266 (message):
  Error generating file
  /tmp/luarocks_cunn-scm-1-9819/cunn/build/lib/THCUNN/CMakeFiles/THCUNN.dir//./THCUNN_generated_HardTanh.cu.o


lib/THCUNN/CMakeFiles/THCUNN.dir/build.make:98: recipe for target 'lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_HardTanh.cu.o' failed
make[2]: *** [lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_HardTanh.cu.o] Error 1
/usr/include/string.h: In function ‘void* __mempcpy_inline(void*, const void*, size_t)’:
/usr/include/string.h:652:42: error: ‘memcpy’ was not declared in this scope
   return (char *) memcpy (__dest, __src, __n) + __n;
                                          ^
/usr/include/string.h: In function ‘void* __mempcpy_inline(void*, const void*, size_t)’:
/usr/include/string.h:652:42: error: ‘memcpy’ was not declared in this scope
   return (char *) memcpy (__dest, __src, __n) + __n;
                                          ^
/usr/include/string.h: In function ‘void* __mempcpy_inline(void*, const void*, size_t)’:
/usr/include/string.h:652:42: error: ‘memcpy’ was not declared in this scope
   return (char *) memcpy (__dest, __src, __n) + __n;
                                          ^
CMake Error at THCUNN_generated_AbsCriterion.cu.o.cmake:266 (message):
  Error generating file
  /tmp/luarocks_cunn-scm-1-9819/cunn/build/lib/THCUNN/CMakeFiles/THCUNN.dir//./THCUNN_generated_AbsCriterion.cu.o


lib/THCUNN/CMakeFiles/THCUNN.dir/build.make:77: recipe for target 'lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_AbsCriterion.cu.o' failed
make[2]: *** [lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_AbsCriterion.cu.o] Error 1
CMake Error at THCUNN_generated_LogSigmoid.cu.o.cmake:266 (message):
  Error generating file
  /tmp/luarocks_cunn-scm-1-9819/cunn/build/lib/THCUNN/CMakeFiles/THCUNN.dir//./THCUNN_generated_LogSigmoid.cu.o


lib/THCUNN/CMakeFiles/THCUNN.dir/build.make:406: recipe for target 'lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_LogSigmoid.cu.o' failed
make[2]: *** [lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_LogSigmoid.cu.o] Error 1
/usr/include/string.h: In function ‘void* __mempcpy_inline(void*, const void*, size_t)’:
/usr/include/string.h:652:42: error: ‘memcpy’ was not declared in this scope
   return (char *) memcpy (__dest, __src, __n) + __n;
                                          ^
CMake Error at THCUNN_generated_DistKLDivCriterion.cu.o.cmake:266 (message):
  Error generating file
  /tmp/luarocks_cunn-scm-1-9819/cunn/build/lib/THCUNN/CMakeFiles/THCUNN.dir//./THCUNN_generated_DistKLDivCriterion.cu.o


lib/THCUNN/CMakeFiles/THCUNN.dir/build.make:63: recipe for target 'lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_DistKLDivCriterion.cu.o' failed
make[2]: *** [lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_DistKLDivCriterion.cu.o] Error 1
CMake Error at THCUNN_generated_MSECriterion.cu.o.cmake:266 (message):
  Error generating file
  /tmp/luarocks_cunn-scm-1-9819/cunn/build/lib/THCUNN/CMakeFiles/THCUNN.dir//./THCUNN_generated_MSECriterion.cu.o


lib/THCUNN/CMakeFiles/THCUNN.dir/build.make:105: recipe for target 'lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_MSECriterion.cu.o' failed
make[2]: *** [lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_MSECriterion.cu.o] Error 1
/usr/include/string.h: In function ‘void* __mempcpy_inline(void*, const void*, size_t)’:
/usr/include/string.h:652:42: error: ‘memcpy’ was not declared in this scope
   return (char *) memcpy (__dest, __src, __n) + __n;
                                          ^
CMake Error at THCUNN_generated_LookupTable.cu.o.cmake:266 (message):
  Error generating file
  /tmp/luarocks_cunn-scm-1-9819/cunn/build/lib/THCUNN/CMakeFiles/THCUNN.dir//./THCUNN_generated_LookupTable.cu.o


lib/THCUNN/CMakeFiles/THCUNN.dir/build.make:70: recipe for target 'lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_LookupTable.cu.o' failed
make[2]: *** [lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_LookupTable.cu.o] Error 1
CMakeFiles/Makefile2:103: recipe for target 'lib/THCUNN/CMakeFiles/THCUNN.dir/all' failed
make[1]: *** [lib/THCUNN/CMakeFiles/THCUNN.dir/all] Error 2
Makefile:127: recipe for target 'all' failed
make: *** [all] Error 2

Error: Build error: Failed building.
Installing https://raw.githubusercontent.com/torch/rocks/master/cunn-scm-1.rockspec...
Using https://raw.githubusercontent.com/torch/rocks/master/cunn-scm-1.rockspec... switching to 'build' mode
cmake -E make_directory build && cd build && cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_PREFIX_PATH="/home/kuo/torch/install/bin/.." -DCMAKE_INSTALL_PREFIX="/home/kuo/torch/install/lib/luarocks/rocks/cunn/scm-1" && make -j$(getconf _NPROCESSORS_ONLN) install

This looks like a problem with CMake. On my Ubuntu 15.10, I used CMake 3.2.2 to install torch and everything. On my Ubuntu 16.04, I'm currently running CMake 3.5.1. Any idea how I can try to fix this?

The text was updated successfully, but these errors were encountered:

andreaskoepf · 2016-05-02T06:39:08Z

Quickfix: define _FORCE_INLINES, e.g. add set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -D_FORCE_INLINES") at the beginning of the CMakeLists.txt files of ctorch, cunn and cunnx.

Same problem mentioned at other places:
torch/torch7#670
torch/cutorch#401

chialikuo · 2016-05-02T08:47:18Z

Thanks. But is there a way to incorporate this fix if I want to install the package with luarocks?

manugarri · 2016-05-17T09:45:05Z

@KUO000 here is how I fixed it in case you are looking for a solution.

git clone https://github.com/torch/cunn
Edit cunn/rocks/cunn-scm-1.rockspec line where it says:

FLAGS=${CMAKE_CXX_FLAGS}

replace with

FLAGS="${CMAKE_CXX_FLAGS} -D_FORCE_INLINES"

then install with luarocks install rocks/cunn-scm-1.rockspec

spandanagella · 2016-05-26T10:23:48Z

I tried updating cunn with above instructions and I get below erros. Any idea whats causing the issue.

I tried with gcc 4.8.1 cuda 7.0.28 and gcc 4.8.1 cuda 7.5.18

Errors:
tmp/luarocks_cunn-scm-1-1796/cunn/lib/THCUNN/SparseLinear.cu(53): error: identifier "THCudaIntTensor" is undefined

/tmp/luarocks_cunn-scm-1-1796/cunn/lib/THCUNN/SparseLinear.cu(53): error: identifier "rowbuf" is undefined

/tmp/luarocks_cunn-scm-1-1796/cunn/lib/THCUNN/SparseLinear.cu(53): error: identifier "THCudaIntTensor_new" is undefined

/tmp/luarocks_cunn-scm-1-1796/cunn/lib/THCUNN/SparseLinear.cu(54): error: identifier "csrPtrs" is undefined

/tmp/luarocks_cunn-scm-1-1796/cunn/lib/THCUNN/SparseLinear.cu(55): error: identifier "colInds" is undefined

/tmp/luarocks_cunn-scm-1-1796/cunn/lib/THCUNN/SparseLinear.cu(58): error: identifier "THCudaIntTensor_resize1d" is undefined

/tmp/luarocks_cunn-scm-1-1796/cunn/lib/THCUNN/SparseLinear.cu(67): error: identifier "THCudaIntTensor_copyCudaFloat" is undefined

/tmp/luarocks_cunn-scm-1-1796/cunn/lib/THCUNN/SparseLinear.cu(75): error: identifier "THCudaIntTensor_data" is undefined

/tmp/luarocks_cunn-scm-1-1796/cunn/lib/THCUNN/SparseLinear.cu(113): error: identifier "THCudaIntTensor_free" is undefined

/tmp/luarocks_cunn-scm-1-1796/cunn/lib/THCUNN/SparseLinear.cu(146): error: identifier "THCudaIntTensor" is undefined

/tmp/luarocks_cunn-scm-1-1796/cunn/lib/THCUNN/SparseLinear.cu(146): error: identifier "colbuf" is undefined

/tmp/luarocks_cunn-scm-1-1796/cunn/lib/THCUNN/SparseLinear.cu(146): error: identifier "THCudaIntTensor_new" is undefined

/tmp/luarocks_cunn-scm-1-1796/cunn/lib/THCUNN/SparseLinear.cu(147): error: identifier "colPtrs" is undefined

/tmp/luarocks_cunn-scm-1-1796/cunn/lib/THCUNN/SparseLinear.cu(148): error: identifier "rowInds" is undefined

/tmp/luarocks_cunn-scm-1-1796/cunn/lib/THCUNN/SparseLinear.cu(157): error: identifier "THCudaIntTensor_resize1d" is undefined

/tmp/luarocks_cunn-scm-1-1796/cunn/lib/THCUNN/SparseLinear.cu(163): error: identifier "THCudaIntTensor_copyCudaFloat" is undefined

/tmp/luarocks_cunn-scm-1-1796/cunn/lib/THCUNN/SparseLinear.cu(172): error: identifier "THCudaIntTensor_data" is undefined

/tmp/luarocks_cunn-scm-1-1796/cunn/lib/THCUNN/SparseLinear.cu(213): error: identifier "THCudaIntTensor_free" is undefined

18 errors detected in the compilation of "/tmp/tmpxft_00018450_00000000-7_SparseLinear.cpp1.ii".
CMake Error at THCUNN_generated_SparseLinear.cu.o.cmake:266 (message):
Error generating file
/tmp/luarocks_cunn-scm-1-1796/cunn/build/lib/THCUNN/CMakeFiles/THCUNN.dir//./THCUNN_generated_SparseLinear.cu.o

make[2]: *** [lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_SparseLinear.cu.o] Error 1
make[2]: *** Waiting for unfinished jobs....
make[1]: *** [lib/THCUNN/CMakeFiles/THCUNN.dir/all] Error 2
make: *** [all] Error 2

robotnikthingy · 2016-06-14T05:01:40Z

@manugarri

I do not see anywhere to put -D_FORCE_INLINES in the cunn-scm-1.rockspec

I tried adding it to this line in cunn-scm-1.rockspec
build_command = [[ cmake -E make_directory build && cd build && cmake .. -DLUALIB=$(LUALIB) -D_FORCE_INLINES -DCMAKE_CXX_FLAGS=${CMAKE_CXX_FLAGS} -D_FORCE_INLINES -DCMAKE_BUILD_TYPE=Release -DCMAKE_PREFIX_PATH="$(LUA_BINDIR)/.." -DCMAKE_INSTALL_PREFIX="$(PREFIX)" && $(MAKE) -j$(getconf _NPROCESSORS_ONLN) install ]],
but it gives the error

Parse error in command line argument: -D_FORCE_INLINES Should be: VAR:type=value

soumith · 2016-06-14T05:18:06Z

@robotnikthingy this stuff should already be fixed now!

robotnikthingy · 2016-06-14T05:29:17Z

@soumith

I seem to be still getting the same error as the original poster unfortunately

`Cloning into 'cunn'...
remote: Counting objects: 77, done.
remote: Compressing objects: 100% (72/72), done.
remote: Total 77 (delta 18), reused 12 (delta 1), pack-reused 0
Receiving objects: 100% (77/77), 97.02 KiB | 0 bytes/s, done.
Resolving deltas: 100% (18/18), done.
Checking connectivity... done.
Warning: unmatched variable LUALIB
cmake -E make_directory build && cd build && cmake .. -DLUALIB= -DCMAKE_CXX_FLAGS=${D_FORCE_INLINES} -DCMAKE_BUILD_TYPE=Release -DCMAKE_PREFIX_PATH="/usr/bin/.." -DCMAKE_INSTALL_PREFIX="/usr/local/lib/luarocks/rocks/cunn/scm-1" && make -j$(getconf _NPROCESSORS_ONLN) install

-- The C compiler identification is GNU 5.3.1
-- The CXX compiler identification is GNU 5.3.1
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Torch7 in /usr
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Found CUDA: /usr (found suitable version "7.5", minimum required is "6.5")
-- Compiling for CUDA architecture: 2.1(2.0)
-- Found gcc >=5 and CUDA <= 7.5, adding workaround C++ flags
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:

LUALIB

-- Build files have been written to: /tmp/luarocks_cunn-scm-1-7901/cunn/build
[ 1%] Building NVCC (Device) object lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_LookupTable.cu.o
[ 7%] Building NVCC (Device) object lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_VolumetricMaxPooling.cu.o
[ 7%] Building NVCC (Device) object lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_SpatialDilatedConvolution.cu.o
[ 7%] Building NVCC (Device) object lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_Sigmoid.cu.o
[ 9%] Building NVCC (Device) object lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_SpatialFractionalMaxPooling.cu.o
[ 11%] Building NVCC (Device) object lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_PReLU.cu.o
[ 13%] Building NVCC (Device) object lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_AbsCriterion.cu.o
[ 15%] Building NVCC (Device) object lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_HardTanh.cu.o
/tmp/luarocks_cunn-scm-1-7901/cunn/lib/THCUNN/SpatialFractionalMaxPooling.cu:3:31: fatal error: THCDeviceTensor.cuh: No such file or directory
/tmp/luarocks_cunn-scm-1-7901/cunn/lib/THCUNN/VolumetricMaxPooling.cu:3:31: fatal error: THCDeviceTensor.cuh: No such file or directory
compilation terminated.
compilation terminated.
/tmp/luarocks_cunn-scm-1-7901/cunn/lib/THCUNN/PReLU.cu:2:25: fatal error: THCReduce.cuh: No such file or directory
compilation terminated.
CMake Error at THCUNN_generated_SpatialFractionalMaxPooling.cu.o.cmake:207 (message):
Error generating
/tmp/luarocks_cunn-scm-1-7901/cunn/build/lib/THCUNN/CMakeFiles/THCUNN.dir//./THCUNN_generated_SpatialFractionalMaxPooling.cu.o

CMake Error at THCUNN_generated_VolumetricMaxPooling.cu.o.cmake:207 (message):
Error generating
/tmp/luarocks_cunn-scm-1-7901/cunn/build/lib/THCUNN/CMakeFiles/THCUNN.dir//./THCUNN_generated_VolumetricMaxPooling.cu.o

CMake Error at THCUNN_generated_PReLU.cu.o.cmake:207 (message):
Error generating
/tmp/luarocks_cunn-scm-1-7901/cunn/build/lib/THCUNN/CMakeFiles/THCUNN.dir//./THCUNN_generated_PReLU.cu.o

lib/THCUNN/CMakeFiles/THCUNN.dir/build.make:70: recipe for target 'lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_VolumetricMaxPooling.cu.o' failed
make[2]: *** [lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_VolumetricMaxPooling.cu.o] Error 1
make[2]: *** Waiting for unfinished jobs....
lib/THCUNN/CMakeFiles/THCUNN.dir/build.make:413: recipe for target 'lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_SpatialFractionalMaxPooling.cu.o' failed
make[2]: *** [lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_SpatialFractionalMaxPooling.cu.o] Error 1
lib/THCUNN/CMakeFiles/THCUNN.dir/build.make:105: recipe for target 'lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_PReLU.cu.o' failed
make[2]: *** [lib/THCUNN/CMakeFiles/THCUNN.dir/THCUNN_generated_PReLU.cu.o] Error 1
CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
Removing non-existent dependency file: generic/THStorage.h

CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
Removing non-existent dependency file: generic/THStorage.h

CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
Removing non-existent dependency file: generic/THStorageCopy.h

CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
Removing non-existent dependency file: generic/THCStorage.h

CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
Removing non-existent dependency file: generic/THCStorageCopy.h

CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
Removing non-existent dependency file: generic/THTensor.h

CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
Removing non-existent dependency file: generic/THTensorCopy.h

CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
Removing non-existent dependency file: generic/THTensorRandom.h

CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
Removing non-existent dependency file: generic/THTensorMath.h

CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
Removing non-existent dependency file: generic/THTensorConv.h

CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
Removing non-existent dependency file: generic/THTensorLapack.h

CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
Removing non-existent dependency file: generic/THCTensor.h

CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
Removing non-existent dependency file: generic/THCTensorCopy.h

CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
Removing non-existent dependency file: generic/THCTensorMath.h

CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
Removing non-existent dependency file: generic/THCTensorMathPairwise.h

CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
Removing non-existent dependency file: generic/THCTensorMath.h

CMake Warning at /usr/share/cmake-3.5/Modules/FindCUDA/make2cmake.cmake:65 (message):
Removing non-existent dependency file: generic/THCTensorMathPointwise.h