Bioinformatic utilities in Go
An oversimplified method to find allele specific expression in a normalized expression table and pedigree information
Usage: allelespecificexp -exp table.tsv -group "M M M F F F 1 1 1 2 2 2 3 3 3"
M marks the column of the mother RNA expression.
F marks the column of the father RNA expression.
Numbers marks the offsprings.
Replicates should have similar group ids.
Using regular expression to find fasta records
Create a smaller random subset of a fasta file
Split a multifasta into small, (roughly) equal proportions. Do not split sequences.
Simple HMM framework. Right now it is just a test framework
Filter fastq file by read id
Circular RNA finding tool
Scaffolding using a GFF annotation
Create simulated VCF file with two parents and siblings and simulate recombination events
Create mother and father haplotype references
Create simulated reads came from circular RNA sample
Find misassemblies using soft and hard clipped long reads