APOE: regression with multiple sites

[krootesmurdy]

error from running 3 sites across 3 machines
"Pipeline error from central node\n Error details: Computation failed with exitcode 1 and stderr Traceback (most recent call last):\n File "/computation/scripts/remote.py", line 260, in \n sys.stdout.write(remote_0(PARAM_DICT))\n File "/computation/scripts/remote.py", line 41, in remote_0\n covar_keys, unique_count = return_uniques_and_counts(df)\n File "/computation/scripts/remote_ancillary.py", line 31, in return_uniques_and_counts\n flat_list = [item for sublist in row for item in sublist]\n File "/computation/scripts/remote_ancillary.py", line 31, in \n flat_list = [item for sublist in row for item in sublist]\nTypeError: 'float' object is not iterable\n"

[krootesmurdy]

additional error:
"Pipeline error from pipeline 6335f3207764e538a5379100 user: krootesmurdy\n Error details: Computation failed with exitcode 1 and stderr Traceback (most recent call last):\n File "/computation/scripts/local.py", line 189, in \n sys.stdout.write(local_1(PARAM_DICT))\n File "/computation/scripts/local.py", line 74, in local_1\n _, local_stats_list = local_stats_to_dict_numba(args, encoded_X, y)\n File "/computation/scripts/local_ancillary.py", line 94, in local_stats_to_dict_numba\n params, _, tvalues, rsquared, dof_global = gather_local_stats(X1, y)\n File "/usr/local/lib/python3.7/site-packages/numba/np/linalg.py", line 824, in _inv_err_handler\n "Matrix is singular to machine precision.")\nnumpy.linalg.LinAlgError: Matrix is singular to machine precision.\n"

seemed to be solved with changing the covariate from number to string

[krootesmurdy]

same error: "Pipeline error from pipeline 6335f1597764e538a53790cd user: Emory\n Error details: Computation failed with exitcode 1 and stderr Traceback (most recent call last):\n File "/computation/scripts/local.py", line 189, in \n sys.stdout.write(local_1(PARAM_DICT))\n File "/computation/scripts/local.py", line 74, in local_1\n _, local_stats_list = local_stats_to_dict_numba(args, encoded_X, y)\n File "/computation/scripts/local_ancillary.py", line 94, in local_stats_to_dict_numba\n params, _, tvalues, rsquared, dof_global = gather_local_stats(X1, y)\n File "/usr/local/lib/python3.7/site-packages/numba/np/linalg.py", line 824, in _inv_err_handler\n "Matrix is singular to machine precision.")\nnumpy.linalg.LinAlgError: Matrix is singular to machine precision.\n"

[pixelsaurus]

Latest error: "Pipeline error from central node\n Error details: Computation failed with exitcode 1 and stderr Traceback (most recent call last):\n File "/computation/scripts/remote.py", line 260, in \n sys.stdout.write(remote_0(PARAM_DICT))\n File "/computation/scripts/remote.py", line 41, in remote_0\n covar_keys, unique_count = return_uniques_and_counts(df)\n File "/computation/scripts/remote_ancillary.py", line 31, in return_uniques_and_counts\n flat_list = [item for sublist in row for item in sublist]\n File "/computation/scripts/remote_ancillary.py", line 31, in \n flat_list = [item for sublist in row for item in sublist]\nTypeError: 'float' object is not iterable\n"

[rssk]

did you get to dump the specs on these?