@trichelab

The Triche Lab

"If it breaks, you get to keep the pieces"

  • compartmap

    Forked from biobenkj/compartmap

    (Un)supvervised clustering of shrunken A/B compartments from ATAC-seq and methylation arrays

    R 1 Updated Oct 18, 2018

  • MTseeker

    mitochondrial variant analysis tools for Bioconductor

    r genetics bioconductor mitochondria
    R 1 3 Updated Oct 15, 2018

  • MTseekerData

    data for MTseeker

    R Updated Oct 15, 2018

  • fishfarm

    A farm for fishplots.

    R Updated Oct 11, 2018

  • ATACseeker

    Forked from RamsinghLab/ATACseeker

    ATACseq tools for Bioconductor

    R 1 5 Updated Oct 6, 2018

  • biscuiteer

    R 1 3 Updated Sep 26, 2018

  • projectR

    Forked from genesofeve/projectR
    R 4 Updated Sep 13, 2018

  • arrayHowTo

    A very simple walkthrough of DNA methylation microarray processing with SeSAMe and minfi.

    Apache-2.0 Updated Aug 7, 2018

  • scanorama

    Forked from brianhie/scanorama

    Panoramic stitching of heterogeneous single cell transcriptomic data

    Python 8 MIT Updated Jul 31, 2018

  • PAMES

    Forked from cgplab/PAMES

    Tool to estimate purity of tumor samples exploiting DNA Methylation data

    R 7 GPL-3.0 Updated Jul 25, 2018

  • dmrseq

    Forked from kdkorthauer/dmrseq

    R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing

    R 5 MIT Updated Jul 24, 2018

  • haplogrep-cmd

    Forked from seppinho/haplogrep-cmd

    HaploGrep - fastest way to classify your mtDNA profiles into haplogroups.

    Java 4 MIT Updated Jun 22, 2018

  • biscuit

    Forked from zwdzwd/biscuit

    BISuilfite-seq CUI Toolkit

    C 11 Updated May 14, 2018

  • squeakr

    Forked from splatlab/squeakr

    Squeakr: An Exact and Approximate k -mer Counting System

    C++ 16 BSD-3-Clause Updated May 11, 2018

  • stereogene

    Forked from favorov/stereogene
    C++ 3 Updated May 11, 2018

  • MToolBox

    Forked from mitoNGS/MToolBox

    A bioinformatics pipeline to analyze mtDNA from NGS data

    Python 20 GPL-3.0 Updated Apr 30, 2018

  • mantis

    Forked from splatlab/mantis

    Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index

    C++ 8 BSD-3-Clause Updated Apr 12, 2018

  • MutationTime.R

    Forked from gerstung-lab/MutationTimeR

    An R script to time somatic mutations

    R 6 Updated Apr 11, 2018

  • MTB-Report

    Forked from jperera-bel/MTB-Report

    The user can generate Molecular Tumor Board reports for TCGA samples

    R 1 Updated Mar 19, 2018

  • phy-mer

    Forked from MEEIBioinformaticsCenter/phy-mer

    phy-mer

    Python 8 Updated Oct 12, 2017

  • timescape

    Forked from shahcompbio/timescape

    Visualization tool for temporal clonal evolution.

    JavaScript 4 Updated Sep 12, 2017

  • mapscape

    Forked from shahcompbio/mapscape

    Visualization tool for spatial clonal evolution.

    HTML 3 Updated Sep 12, 2017

  • indRop

    Forked from caleblareau/indRop

    An R package for basic indrop analyses and data handling

    R 1 MIT Updated May 25, 2017

  • single-cell-3prime-paper

    Forked from 10XGenomics/single-cell-3prime-paper
    R 18 Updated May 12, 2017

  • scATAC_Compartments

    Forked from Jfortin1/scATAC_Compartments

    A/B compartments from single-cell ATAC seq (scATAC)

    R 2 Updated Aug 22, 2016

  • bwa-aln-xeon-phi-0.5.10

    Forked from intel-mic/bwa-aln-xeon-phi-0.5.10

    bwa-aln-xeon-phi optimizes bwa aln performance on both Xeon and Xeon Phi platform, and support symmetric running model on Xeon and Xeon Phi hybrid nodes.

    C 5 Updated Sep 4, 2014

    • Top languages

    Loading…

    Most used topics

    Loading…
    0

    People

    This organization has no public members. You must be a member to see who’s a part of this organization.