The Triche Lab

Repositories

• velocessor

  velocity processor
  R 0 0 0 0 Updated Oct 23, 2020

• compartmap

  Forked from biobenkj/compartmap

  Chromatin compartment inference from ATACseq, RNAseq, and DNA methylation
  R 4 1 0 0 Updated Oct 14, 2020

• spiky
  R 0 0 2 0 Updated Oct 2, 2020

• tbmate

  Forked from zhou-lab/tbmate

  TabixMate: a companion tool that works with tabix to enable coordinate-date decoupling.
  C MIT 1 0 0 0 Updated Sep 17, 2020

• enmity

  loading scNMT raw(-ish) data
  R 0 0 0 0 Updated Sep 2, 2020

• spikeR

  Some best practices for using spike-in controls in various single-cell and bulk assays
  Makefile 0 0 0 0 Updated Aug 27, 2020

• single_cell_analyses

  Forked from VanAndelInstitute/single_cell_analyses

  Examples to help bootstrap your analysis of single cell data sets
  Jupyter Notebook MIT 2 0 0 0 Updated Aug 14, 2020

• biscuiteer

  tools for analysing Biscuit (https://github.com/zwdzwd/biscuit/wiki/Align-bisulfite-converted-reads) output
  R 6 3 5 1 Updated Aug 3, 2020

• h5testR

  simplistic package for HDF5-related testing in R/Bioconductor
  R 0 1 0 0 Updated Jul 9, 2020

• AI-TAC

  Forked from smaslova/AI-TAC
  Python MIT 4 0 0 0 Updated Jun 9, 2020

• styler

  Forked from r-lib/styler

  Non-invasive pretty printing of R code
  R 48 0 0 0 Updated Jun 6, 2020

• biocthis

  Forked from lcolladotor/biocthis

  Automate package and project setup for Bioconductor packages
  R 6 0 0 0 Updated May 27, 2020

• biscuiteerData

  Forked from jamorrison/biscuiteerData
  R 1 0 0 0 Updated Apr 22, 2020

• ghactions

  Forked from maxheld83/ghactions

  GitHub actions for R and accompanying R package
  R MIT 16 0 0 0 Updated Apr 14, 2020

• salmon

  Forked from COMBINE-lab/salmon

  🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
  C++ GPL-3.0 108 0 0 0 Updated Apr 10, 2020

• try-manubot

  Forked from manubot/try-manubot

  A repository to practice contributing to a Manubot manuscript
  HTML 57 0 0 0 Updated Apr 1, 2020

• TE-Driven-CTCF-Loop-Evol

  Forked from Boyle-Lab/TE-Driven-CTCF-Loop-Evol
  R 1 0 0 0 Updated Mar 5, 2020

• scHLAcount

  Forked from 10XGenomics/scHLAcount

  Count HLA alleles in single-cell RNA-seq data
  TeX MIT 8 0 0 0 Updated Mar 3, 2020

• basejump

  Forked from acidgenomics/basejump

  Base functions for bioinformatics and R package development.
  R MIT 2 0 0 0 Updated Jan 8, 2020

• MTseeker

  mitochondrial variant analysis tools

  r genetics bioconductor mitochondria
  R 8 6 2 0 Updated Nov 18, 2019

• MTseekerData

  data for MTseeker
  R 1 0 0 0 Updated Nov 18, 2019

• rehash

  idiotically simple translucent data sharing for Bioconductor data structures
  R MIT 0 0 0 0 Updated Oct 19, 2019

• pathway-mapper

  Forked from iVis-at-Bilkent/pathway-mapper

  An interactive and collaborative graphical curation tool for cancer pathways
  JavaScript 22 0 0 0 Updated Jul 26, 2019

• manta

  Forked from Illumina/manta

  Structural variant and indel caller for mapped sequencing data
  C++ 76 0 0 0 Updated Jul 17, 2019

• oncocytomaBams

  oncocytoma BAMs for MTseeker tutorial
  1 0 0 0 Updated Jun 12, 2019

• ATACseeker

  Forked from RamsinghLab/ATACseeker

  ATACseq tools for Bioconductor
  R 6 1 1 0 Updated Mar 26, 2019

• biscuit

  Forked from zhou-lab/biscuit

  BISuilfite-seq CUI Toolkit
  C 15 0 0 0 Updated Jan 9, 2019

• BFA

  Forked from ctggroup/BFA
  C++ MIT 1 0 0 0 Updated Nov 30, 2018

• scMT

  single-cell MT variant calling data and code per http://cancerres.aacrjournals.org/content/early/2019/02/01/0008-5472.CAN-18-2220
  R 0 0 0 0 Updated Nov 3, 2018

• fishfarm

  A farm for fishplots.
  R 0 0 0 0 Updated Oct 11, 2018