@trichelab

The Triche Lab

"If it breaks, you get to keep the pieces"

  • (Un)supvervised clustering of shrunken A/B compartments from ATAC-seq and methylation arrays

    R 1 Updated Oct 18, 2018
  • mitochondrial variant analysis tools for Bioconductor

    R 1 3 Updated Oct 15, 2018
  • data for MTseeker

    R Updated Oct 15, 2018
  • A farm for fishplots.

    R Updated Oct 11, 2018
  • ATACseq tools for Bioconductor

    R 1 5 Updated Oct 6, 2018
  • R 1 3 Updated Sep 26, 2018
  • R 4 Updated Sep 13, 2018
  • A very simple walkthrough of DNA methylation microarray processing with SeSAMe and minfi.

    Apache-2.0 Updated Aug 7, 2018
  • Panoramic stitching of heterogeneous single cell transcriptomic data

    Python 8 MIT Updated Jul 31, 2018
  • PAMES

    Forked from cgplab/PAMES

    Tool to estimate purity of tumor samples exploiting DNA Methylation data

    R 7 GPL-3.0 Updated Jul 25, 2018
  • R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing

    R 5 MIT Updated Jul 24, 2018
  • HaploGrep - fastest way to classify your mtDNA profiles into haplogroups.

    Java 4 MIT Updated Jun 22, 2018
  • BISuilfite-seq CUI Toolkit

    C 11 Updated May 14, 2018
  • Squeakr: An Exact and Approximate k -mer Counting System

    C++ 16 BSD-3-Clause Updated May 11, 2018
  • C++ 3 Updated May 11, 2018
  • A bioinformatics pipeline to analyze mtDNA from NGS data

    Python 20 GPL-3.0 Updated Apr 30, 2018
  • Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index

    C++ 8 BSD-3-Clause Updated Apr 12, 2018
  • An R script to time somatic mutations

    R 6 Updated Apr 11, 2018
  • The user can generate Molecular Tumor Board reports for TCGA samples

    R 1 Updated Mar 19, 2018
  • phy-mer

    Python 8 Updated Oct 12, 2017
  • Visualization tool for temporal clonal evolution.

    JavaScript 4 Updated Sep 12, 2017
  • Visualization tool for spatial clonal evolution.

    HTML 3 Updated Sep 12, 2017
  • An R package for basic indrop analyses and data handling

    R 1 MIT Updated May 25, 2017
  • R 18 Updated May 12, 2017
  • A/B compartments from single-cell ATAC seq (scATAC)

    R 2 Updated Aug 22, 2016
  • bwa-aln-xeon-phi optimizes bwa aln performance on both Xeon and Xeon Phi platform, and support symmetric running model on Xeon and Xeon Phi hybrid nodes.

    C 5 Updated Sep 4, 2014
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