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(Un)supvervised clustering of shrunken A/B compartments from ATAC-seq and methylation arrays
mitochondrial variant analysis tools for Bioconductor
data for MTseeker
A farm for fishplots.
ATACseq tools for Bioconductor
tools for analysing Biscuit (https://github.com/zwdzwd/biscuit/wiki/Align-bisulfite-converted-reads) output
A very simple walkthrough of DNA methylation microarray processing with SeSAMe and minfi.
Panoramic stitching of heterogeneous single cell transcriptomic data
Tool to estimate purity of tumor samples exploiting DNA Methylation data
R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
HaploGrep - fastest way to classify your mtDNA profiles into haplogroups.
BISuilfite-seq CUI Toolkit
Squeakr: An Exact and Approximate k -mer Counting System
A bioinformatics pipeline to analyze mtDNA from NGS data
Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index
An R script to time somatic mutations
The user can generate Molecular Tumor Board reports for TCGA samples
Visualization tool for temporal clonal evolution.
Visualization tool for spatial clonal evolution.
An R package for basic indrop analyses and data handling
A/B compartments from single-cell ATAC seq (scATAC)
bwa-aln-xeon-phi optimizes bwa aln performance on both Xeon and Xeon Phi platform, and support symmetric running model on Xeon and Xeon Phi hybrid nodes.
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