Kokkos + KokkosKernels Promotion to 2.8.00 #4329

ndellingwood · 2019-02-06T00:47:55Z

This promotes Kokkos and KokkosKernels to Version 2.8.00.

@trilinos/kokkos @trilinos/kokkos-kernels

This update includes the following:

Kokkos

Volta fixes, C++14 support and testing, Capability to add environment variables for all command line arguments, Threads RangePolicy fix for offsets, RemoteMemorySpace support

KokkosKernels

BLAS TPL + build system fixes (Complex API, fortran mangling), C++14 support and testing, Batched GETRS

Kokkos Changelog

2.8.00 (2019-02-05)

Full Changelog

Implemented enhancements:

Capability, Tests: C++14 support and testing #1914
Capability: Add environment variables for all command line arguments #1798
Capability: --kokkos-ndevices not working for Slurm #1920
View: Undefined behavior when deep copying from and to an empty unmanaged view #1967
BuildSystem: nvcc_wrapper should stop immediately if nvcc is not in PATH #1861

Fixed bugs:

Cuda: Fix Volta Issues 1 Non-deterministic behavior on Volta, runs fine on Pascal #1949
Cuda: Fix Volta Issues 2 CUDA Team Scan gives wrong values on Volta with -G compile flag #1942
Cuda: illegal warp sync in parallel_reduce by functor on Turing 75 #1958
Threads: Pthreads backend does not handle RangePolicy with offset correctly #1976
Atomics: atomic_fetch_oper has no case for Kokkos::complex<double> or other 16-byte types #1951
MDRangePolicy: Fix zero-length range #1948
TeamThreadRange: TeamThreadRange MaxLoc reduce doesnt compile #1909

KokkosKernels Changelog

2.8.00 (2019-02-05)

Full Changelog

Implemented enhancements:

Capability, Tests: C++14 Support and Testing #351
Capability: Batched getrs #332
More Kernel Labels for KokkosBlas #239
Name all parallel kernels and regions #124

Fixed bugs:

BLAS TPL: BLAS underscore mangling #369
BLAS TPL, Complex: Promotion 2.7.24 broke MV unit tests in Tpetra with complex types #360
GEMM: GEMM uses wrong function for computing shared memory allocation size #368
BuildSystem: BLAS TPL macro not properly enabled with MKL BLAS #347
BuildSystem: make clean - errors #353
Compiler Workaround: Internal compiler error in KokkosBatched::Experimental::TeamGemm #349
KokkosBlas: Some KokkosBlas kernels assume default execution space #14

Changes to coordinate with kokkos/kokkos#1886. Various ViewMapping partial specializations now require the final template parameter to be the specialize tag, rather than explicit void. These changes ensure Sacado and Stokhos compatibility with the Kokkos changes. Test with Cuda_Serial build on waterman with cuda/9.2+gcc/7.2 Changes to be committed: modified: packages/sacado/src/KokkosExp_View_Fad.hpp modified: packages/sacado/src/KokkosExp_View_Fad_Contiguous.hpp modified: packages/sacado/src/Kokkos_DynRankView_Fad.hpp modified: packages/sacado/src/Kokkos_DynRankView_Fad_Contiguous.hpp modified: packages/sacado/test/UnitTests/Fad_KokkosTests_Cuda.cpp modified: packages/stokhos/src/sacado/kokkos/pce/KokkosExp_View_UQ_PCE_Contiguous.hpp modified: packages/stokhos/src/sacado/kokkos/vector/KokkosExp_View_MP_Vector_Contiguous.hpp

Remove additional argument to view ctor. Changes to be committed: modified: stokhos/src/sacado/kokkos/Stokhos_Tpetra_Utilities.hpp

…549b57 From repository at git@github.com:kokkos/kokkos.git At commit: commit 5d6e7fb38e96aec88d2c514e1f9be1cf2b549b57 Merge: 9614f72 d1659d1 Author: Nathan Ellingwood <ndellin@sandia.gov> Date: Tue Feb 5 17:10:27 2019 -0700 Merge branch 'develop' for 2.8.00 Part of Kokkos C++ Performance Portability Programming EcoSystem 2.8

…1763439cb56039 From repository at git@github.com:kokkos/kokkos-kernels.git At commit: commit 4ee5f3c6dbd0981f6d8c7a9b2b1763439cb56039 Merge: 94456cf 6a79032 Author: Nathan Ellingwood <ndellin@sandia.gov> Date: Tue Feb 5 17:13:18 2019 -0700 Merge branch 'develop' for 2.8.00 Part of Kokkos C++ Performance Portability Programming EcoSystem 2.8

trilinos-autotester · 2019-02-06T00:50:07Z

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection Is Not Necessary for this Pull Request.

ndellingwood · 2019-02-06T00:50:44Z

Cross-referencing the Kokkos promotion 2.8.00 issue (where testing tracked) kokkos/kokkos#1981

@crtrott @srajama1 @ibaned

Other likely interested parties: @mhoemmen @ZUUL42 @william76

trilinos-autotester · 2019-02-06T00:50:53Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

Test Name: Trilinos_pullrequest_gcc_4.8.4

Build Num: 2376
Status: STARTED

Jenkins Parameters

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JENKINS_JOB_TYPE	Experimental
MPI_MODULE	sems-openmpi/1.8.7
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TRILINOS_SOURCE_BRANCH	kokkos-promotion
TRILINOS_SOURCE_REPO	https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA	`c5c8608`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`fa48062`

Build Information

Test Name: Trilinos_pullrequest_intel_17.0.1

Build Num: 2177
Status: STARTED

Jenkins Parameters

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PULLREQUESTNUM	4329
TEST_REPO_ALIAS	TRILINOS
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TRILINOS_SOURCE_REPO	https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA	`c5c8608`
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Build Num: 668
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Build Num: 295
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Jenkins Parameters

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TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`fa48062`

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Test Name: Trilinos_pullrequest_cuda_9.2

Build Num: 80
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TRILINOS_SOURCE_BRANCH	kokkos-promotion
TRILINOS_SOURCE_REPO	https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA	`c5c8608`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`fa48062`

Using Repos:

Repo: TRILINOS (trilinos/Trilinos)

Pull Request Author: ndellingwood

srajama1

All the individual commits were reviewed in the Kokkos side. The integration tests pass. @ndellingwood Thanks for taking care of this quickly.

trilinos-autotester · 2019-02-06T06:14:26Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: all Jobs PASSED

Pull Request Auto Testing has PASSED (click to expand)

Build Information

Test Name: Trilinos_pullrequest_gcc_4.8.4

Build Num: 2376
Status: PASSED

Jenkins Parameters

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TRILINOS_SOURCE_BRANCH	kokkos-promotion
TRILINOS_SOURCE_REPO	https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA	`c5c8608`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`fa48062`

Build Information

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Build Num: 2177
Status: PASSED

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TRILINOS_SOURCE_BRANCH	kokkos-promotion
TRILINOS_SOURCE_REPO	https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA	`c5c8608`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
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Build Information

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Status: PASSED

Jenkins Parameters

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TRILINOS_SOURCE_REPO	https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA	`c5c8608`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`fa48062`

Build Information

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Build Num: 295
Status: PASSED

Jenkins Parameters

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TRILINOS_SOURCE_BRANCH	kokkos-promotion
TRILINOS_SOURCE_REPO	https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA	`c5c8608`
TRILINOS_TARGET_BRANCH	develop
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Build Num: 80
Status: PASSED

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TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`fa48062`

CDash Test Results for PR# 4329.

trilinos-autotester · 2019-02-06T06:14:43Z

Status Flag 'Pre-Merge Inspection' - SUCCESS: The last commit to this Pull Request has been INSPECTED AND APPROVED by [ srajama1 ]!

trilinos-autotester · 2019-02-06T06:14:51Z

Status Flag 'Pull Request AutoTester' - AutoMerge IS ENABLED, but the Label AT: AUTOMERGE is not set. Either set Label AT: AUTOMERGE or manually merge the PR...

ndellingwood · 2019-02-06T16:36:20Z

Testing results from kokkos/kokkos#1981

Testing 1

Testing with scripts from kokkos-kernels/scripts/trilinos_integration

White Cuda Kepler Nodes

Trilinos pristine: develop branch SHA 80e2cb3
Trilinos updated: kokkos-promotion branch SHA 80e2cb3 (before snapshot)
kokkos develop branch SHA kokkos/kokkos@534b7f3
kokkos-kernels develop SHA kokkos/kokkos-kernels@52a6ba2

Summary

Compilation - No new build failures
Tests - One new failure
Stokhos_TpetraCrsMatrixMPVectorUnitTest_Serial_MPI_4

This test failure was fixed with PR kokkos/kokkos-kernels#381 pattern matching existing fix in Trilinos that tests this case.

Results of a rerun with that updated:

bash-4.2$ ctest -R Stokhos_TpetraCrsMatrixMPVectorUnitTest_Serial_MPI_4
Test project /ascldap/users/ndellin/IntegrationTests-White/cuda-kepler/build_updated
    Start 1683: Stokhos_TpetraCrsMatrixMPVectorUnitTest_Serial_MPI_4
1/1 Test #1683: Stokhos_TpetraCrsMatrixMPVectorUnitTest_Serial_MPI_4 ...   Passed    4.80 sec

White OpenMP

Trilinos pristine: develop branch SHA 80e2cb3
Trilinos updated: kokkos-promotion branch SHA 80e2cb3 (before snapshot)
kokkos develop branch SHA kokkos/kokkos@534b7f3
kokkos-kernels develop SHA kokkos/kokkos-kernels@52a6ba2

Summary

Compilation - No new build failures
Tests - No new test failures

White Cuda + Complex_Double Kepler Nodes

Trilinos pristine: develop branch SHA ac4762e
Trilinos updated: kokkos-promotion branch SHA 80e2cb3 (before snapshot)
kokkos develop branch SHA kokkos/kokkos@534b7f3
kokkos-kernels develop SHA kokkos/kokkos-kernels@67af7da

Summary

Compilation - No new build failures
Tests - No new test failures

Blake Serial

Trilinos pristine: develop branch SHA 80e2cb3
Trilinos updated: kokkos-promotion branch SHA 80e2cb3 (before snapshot)
kokkos develop branch SHA kokkos/kokkos@534b7f3
kokkos-kernels develop SHA kokkos/kokkos-kernels@52a6ba2

Summary

Compilation - No new build failures
Tests - One new failure
Stokhos_TpetraCrsMatrixMPVectorUnitTest_Serial_MPI_4

This test failure was fixed with PR kokkos/kokkos-kernels#381 pattern matching existing fix in Trilinos that tests this case.

Blake Pthreads

Trilinos pristine: develop branch SHA 80e2cb3
Trilinos updated: kokkos-promotion branch SHA 80e2cb3 (before snapshot)
kokkos develop branch SHA kokkos/kokkos@534b7f3
kokkos-kernels develop SHA kokkos/kokkos-kernels@52a6ba2

Summary

Compilation - No new build failures
Tests - One new failure
Stokhos_TpetraCrsMatrixMPVectorUnitTest_Serial_MPI_4

This test failure was fixed with PR kokkos/kokkos-kernels#381 pattern matching existing fix in Trilinos that tests this case.

Testing 2

Various tests using ATDM configurations and packages highly impacted by Kokkos modifications

White cuda-9.2-opt-Kepler37

Build 1: Updated Trilinos, deprecated code disabled

Trilinos updated: kokkos-promotion branch SHA 80e2cb3 (before snapshot)
kokkos develop branch SHA kokkos/kokkos@534b7f3
kokkos-kernels develop SHA kokkos/kokkos-kernels@67af7da

Reproducer instructions

module purge
source ${TRILINOS_DIR}/cmake/std/atdm/load-env.sh cuda-9.2-opt-Kepler37
module swap cmake/3.9.6 cmake/3.12.3

cmake \
 -GNinja \
 -DTrilinos_CONFIGURE_OPTIONS_FILE:STRING=cmake/std/atdm/ATDMDevEnv.cmake \
 -DTrilinos_ENABLE_TESTS=ON \
  -DKOKKOS_ENABLE_DEPRECATED_CODE:BOOL=OFF \
  -DKokkos_SOURCE_DIR_OVERRIDE:STRING=kokkos \
  -DKokkosKernels_SOURCE_DIR_OVERRIDE:STRING=kokkos-kernels \
  -DTrilinos_ENABLE_MueLu=ON \
    -DMueLu_ENABLE_Experimental:BOOL=ON \
    -DMueLu_ENABLE_Kokkos_Refactor:BOOL=ON \
    -DMueLu_ENABLE_Epetra:BOOL=OFF \
    -DXpetra_ENABLE_Experimental:BOOL=ON \
    -DMueLu_ENABLE_TESTS:BOOL=OFF \
    -DMueLu_ENABLE_EXAMPLES:BOOL=OFF \
  -DTrilinos_ENABLE_Tpetra=ON \
  -DTrilinos_ENABLE_Sacado=ON \
  -DTrilinos_ENABLE_Intrepid2=ON \
  -DTrilinos_ENABLE_Panzer=ON \
$TRILINOS_DIR

Summary

Compilation - No build failures
Tests - 4 new failures, however they passed when rerun with ctest (no -j)

        867 - PanzerAdaptersSTK_STK_VolumeSideResponse_MPI_2 (Timeout) #NEW - passed with ctest with no -j
        868 - PanzerAdaptersSTK_ip_coordinates_MPI_2 (Timeout) #NEW - passed with ctest with no -j
        874 - PanzerAdaptersSTK_tDomainInterface_MPI_2 (Timeout) #NEW - passed with ctest with no -j
        875 - PanzerAdaptersSTK_node_normals_MPI_2 (Timeout) #NEW - passed with ctest with no -j

Several pre-existing Panzer failures when deprecated code disabled (occurring in builds with Trilnios VOTD develop branch). Failures indicate view(s) constructed with more arguments than dynamic rank.

White cuda-9.2-debug-Kepler37

Build 2: Updated Trilinos, deprecated code disabled, debugging on

Trilinos updated: kokkos-promotion branch SHA 80e2cb3 (before snapshot)
kokkos develop branch SHA kokkos/kokkos@534b7f3
kokkos-kernels develop SHA kokkos/kokkos-kernels@67af7da

Reproducer instructions

module purge
source $TRILINOS_DIR/cmake/std/atdm/load-env.sh cuda-9.2-debug-Kepler37
module swap cmake/3.9.6 cmake/3.12.3

cmake \
 -GNinja \
 -DTrilinos_CONFIGURE_OPTIONS_FILE:STRING=cmake/std/atdm/ATDMDevEnv.cmake \
 -DTrilinos_ENABLE_TESTS=ON \
  -DTrilinos_ENABLE_Tpetra=ON \
  -DTrilinos_ENABLE_Sacado=ON \
  -DTrilinos_ENABLE_Stokhos=ON \
  -DKOKKOS_ENABLE_DEPRECATED_CODE=OFF \
  -DKokkos_SOURCE_DIR_OVERRIDE:STRING=kokkos \
  -DKokkosKernels_SOURCE_DIR_OVERRIDE:STRING=kokkos-kernels \
$TRILINOS_DIR

Summary

Compilation - No build failures
Tests - No new failures

Several existing Panzer failures when deprecated code disabled (View constructed with more arguments than dynamic rank)

Same as above

Waterman cuda-9.2-opt (Volta)

Build: Updated Trilinos, deprecated code disabled, debugging on

Trilinos updated: kokkos-promotion branch SHA 80e2cb3 (before snapshot)
kokkos develop branch SHA kokkos/kokkos@534b7f3
kokkos-kernels develop SHA kokkos/kokkos-kernels@67af7da

Reproducer instructions

module purge
source ${TRILINOS_DIR}/cmake/std/atdm/load-env.sh cuda-9.2-opt
module swap cmake/3.6.2 cmake/3.12.3

PACKAGE1=Tpetra
PACKAGE2=Sacado
PACKAGE3=Stokhos
PACKAGE4=MueLu
PACKAGE5=Intrepid2
PACKAGE6=Ifpack2
PACKAGE7=Panzer
PACKAGE8=Phalanx
PACKAGE9=Stratimikos
PACKAGE10=Belos

cmake \
 -GNinja \
 -DTrilinos_CONFIGURE_OPTIONS_FILE:STRING=cmake/std/atdm/ATDMDevEnv.cmake \
 -DTrilinos_ENABLE_TESTS=ON \
  -DTrilinos_ENABLE_${PACKAGE1}=ON \
  -DTrilinos_ENABLE_${PACKAGE2}=ON \
  -DTrilinos_ENABLE_${PACKAGE3}=ON \
  -DTrilinos_ENABLE_${PACKAGE4}=ON \
  -DTrilinos_ENABLE_${PACKAGE5}=ON \
  -DTrilinos_ENABLE_${PACKAGE6}=ON \
  -DTrilinos_ENABLE_${PACKAGE7}=ON \
  -DTrilinos_ENABLE_${PACKAGE8}=ON \
  -DTrilinos_ENABLE_${PACKAGE9}=ON \
  -DTrilinos_ENABLE_${PACKAGE10}=ON \
  -DKOKKOS_ENABLE_DEPRECATED_CODE=OFF \
  -DKokkos_SOURCE_DIR_OVERRIDE:STRING=kokkos \
  -DKokkosKernels_SOURCE_DIR_OVERRIDE:STRING=kokkos-kernels \
$TRILINOS_DIR

Summary

Compilation - Build failures in Ifpack2 (deprecated code disabled) fixed in kokkos-promotion branch
Tests - No new failures

Several existing Panzer failures when deprecated code disabled (View constructed with more arguments than dynamic rank)

Same as above

Blake Pthreads Retesting

With PR kokkos/kokkos#1980

Trilinos pristine: develop branch SHA 967ff0a
Trilinos updated: kokkos-promotion branch SHA 05a91ff (merge commit b858cf8)
kokkos issue-1976b branch SHA kokkos/kokkos@f782e0a
kokkos-kernels develop SHA kokkos/kokkos-kernels@67af7da

Summary

No new build failures
No new test failures

Existing test failures for reference:

MueLu_ImportPerformance_Tpetra_MPI_4 (Failed)
MueLu_Q2Q1-Tpetra_MPI_1 (Failed)
ROL_adapters_tpetra_test_sol_TpetraSimulatedConstraintInterfaceCVaR_MPI_4 (Failed)
Stratimikos_test_single_belos_thyra_solver_driver_nos1_nrhs8_MPI_1 (Failed)

ndellingwood · 2019-02-06T16:36:39Z

PR testing successful, merging!

ndellingwood added 7 commits November 7, 2018 18:33

Merge branch 'develop' into kokkos-promotion

5d2e560

ifpack2: compiler fixes with kokkos deprecated code disabled

cf830ca

stokhos: update needed when kokkos deprecated code off

05a91ff

Remove additional argument to view ctor. Changes to be committed: modified: stokhos/src/sacado/kokkos/Stokhos_Tpetra_Utilities.hpp

Merge branch 'develop' into kokkos-promotion

b858cf8

ndellingwood requested review from crtrott and srajama1 February 6, 2019 00:47

This was referenced Feb 6, 2019

Framework: PR testing should enable complex by default #2426

Closed

Kokkos Promotion 2.7.24 to 2.8.00 kokkos/kokkos#1981

Closed

srajama1 approved these changes Feb 6, 2019

View reviewed changes

srajama1 added pkg: Kokkos pkg: KokkosKernels labels Feb 6, 2019

ndellingwood merged commit 9573120 into develop Feb 6, 2019

ndellingwood deleted the kokkos-promotion branch February 6, 2019 17:15

Kokkos + KokkosKernels Promotion to 2.8.00 #4329

Kokkos + KokkosKernels Promotion to 2.8.00 #4329

Conversation

ndellingwood commented Feb 6, 2019

Kokkos

KokkosKernels

Kokkos Changelog

2.8.00 (2019-02-05)

KokkosKernels Changelog

2.8.00 (2019-02-05)

trilinos-autotester commented Feb 6, 2019

ndellingwood commented Feb 6, 2019

trilinos-autotester commented Feb 6, 2019

Build Information

Test Name: Trilinos_pullrequest_gcc_4.8.4

Jenkins Parameters

Build Information

Test Name: Trilinos_pullrequest_intel_17.0.1

Jenkins Parameters

Build Information

Test Name: Trilinos_pullrequest_gcc_4.9.3_SERIAL

Jenkins Parameters

Build Information

Test Name: Trilinos_pullrequest_gcc_7.2.0

Jenkins Parameters

Build Information

Test Name: Trilinos_pullrequest_cuda_9.2

Jenkins Parameters

Using Repos:

srajama1 left a comment

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trilinos-autotester commented Feb 6, 2019

Build Information

Test Name: Trilinos_pullrequest_gcc_4.8.4

Jenkins Parameters

Build Information

Test Name: Trilinos_pullrequest_intel_17.0.1

Jenkins Parameters

Build Information

Test Name: Trilinos_pullrequest_gcc_4.9.3_SERIAL

Jenkins Parameters

Build Information

Test Name: Trilinos_pullrequest_gcc_7.2.0

Jenkins Parameters

Build Information

Test Name: Trilinos_pullrequest_cuda_9.2

Jenkins Parameters

trilinos-autotester commented Feb 6, 2019

trilinos-autotester commented Feb 6, 2019

ndellingwood commented Feb 6, 2019

Testing 1

White Cuda Kepler Nodes

Summary

White OpenMP

Summary

White Cuda + Complex_Double Kepler Nodes

Summary

Blake Serial

Summary

Blake Pthreads

Summary

Testing 2

White cuda-9.2-opt-Kepler37

Build 1: Updated Trilinos, deprecated code disabled

Reproducer instructions

Summary

White cuda-9.2-debug-Kepler37

Build 2: Updated Trilinos, deprecated code disabled, debugging on

Reproducer instructions

Summary

Waterman cuda-9.2-opt (Volta)

Build: Updated Trilinos, deprecated code disabled, debugging on

Reproducer instructions

Summary

Blake Pthreads Retesting

Summary

ndellingwood commented Feb 6, 2019