nosetests failed

[weihongqi]

nosetests output:
EE

ERROR: Failure: ValueError (numpy.ufunc size changed, may indicate binary incompatibility. Expected 216 from C header, got 192 from PyObject)

Traceback (most recent call last):
File "/usr/local/ngseq/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages/nose/loader.py", line 418, in loadTestsFromName
addr.filename, addr.module)
File "/usr/local/ngseq/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/local/ngseq/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/misc/ngseq8/src/circleseq/test/test_circleseq_merged.py", line 16, in
from circleseq import circleseq
File "/misc/ngseq8/src/circleseq/circleseq/circleseq.py", line 16, in
import findCleavageSites
File "/misc/ngseq8/src/circleseq/circleseq/findCleavageSites.py", line 8, in
from statsmodels.distributions.empirical_distribution import ECDF
File "/usr/local/ngseq/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages/statsmodels/distributions/init.py", line 1, in
from statsmodels.tools._testing import PytestTester
File "/usr/local/ngseq/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages/statsmodels/tools/init.py", line 1, in
from .tools import add_constant, categorical
File "/usr/local/ngseq/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages/statsmodels/tools/tools.py", line 6, in
import pandas as pd
File "/usr/local/ngseq/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages/pandas/init.py", line 26, in
from pandas._libs import (hashtable as _hashtable,
File "/usr/local/ngseq/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages/pandas/_libs/init.py", line 4, in
from .tslibs import (
File "/usr/local/ngseq/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages/pandas/_libs/tslibs/init.py", line 4, in
from .conversion import normalize_date, localize_pydatetime, tz_convert_single
File "init.pxd", line 918, in init pandas._libs.tslibs.conversion
ValueError: numpy.ufunc size changed, may indicate binary incompatibility. Expected 216 from C header, got 192 from PyObject

======================================================================
ERROR: Failure: ImportError (C extension: normalize_date not built. If you want to import pandas from the source directory, you may need to run 'python setup.py build_ext --inplace --force' to build the C
extensions first.)

Traceback (most recent call last):
File "/usr/local/ngseq/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages/nose/loader.py", line 418, in loadTestsFromName
addr.filename, addr.module)
File "/usr/local/ngseq/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/local/ngseq/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/misc/ngseq8/src/circleseq/test/test_circleseq_std.py", line 16, in
from circleseq import circleseq
File "/misc/ngseq8/src/circleseq/circleseq/circleseq.py", line 16, in
import findCleavageSites
File "/misc/ngseq8/src/circleseq/circleseq/findCleavageSites.py", line 8, in
from statsmodels.distributions.empirical_distribution import ECDF
File "/usr/local/ngseq/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages/statsmodels/distributions/init.py", line 1, in
from statsmodels.tools._testing import PytestTester
File "/usr/local/ngseq/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages/statsmodels/tools/init.py", line 1, in
from .tools import add_constant, categorical
File "/usr/local/ngseq/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages/statsmodels/tools/tools.py", line 6, in
import pandas as pd
File "/usr/local/ngseq/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages/pandas/init.py", line 35, in
"the C extensions first.".format(module))
ImportError: C extension: normalize_date not built. If you want to import pandas from the source directory, you may need to run 'python setup.py build_ext --inplace --force' to build the C extensions firs
t.

---

Ran 2 tests in 0.003s

FAILED (errors=2)

dependency:
packages/Dev/Python2/2.7.13
packages/Tools/samtools/1.3
Aligner/BWA/0.7.11

pip install -r requirement.txt
Requirement already satisfied: argparse>=1.4.0 in /misc/ngseq8/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages (from -r requirements.txt (line 1)) (1.4.0)
Requirement already satisfied: PyYAML>=3.11 in /misc/ngseq8/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages (from -r requirements.txt (line 2)) (3.12)
Requirement already satisfied: regex>=2018.01.10 in /misc/ngseq8/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages (from -r requirements.txt (line 3)) (2020.7.14)
Requirement already satisfied: HTSeq>=0.6.1p1 in /misc/ngseq8/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages (from -r requirements.txt (line 4)) (0.8.0)
Requirement already satisfied: pyfaidx>=0.2.7 in /misc/ngseq8/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages (from -r requirements.txt (line 5)) (0.5.9.1)
Requirement already satisfied: statsmodels>=0.6.1 in /misc/ngseq8/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages (from -r requirements.txt (line 6)) (0.11.0)
Requirement already satisfied: pysam>=0.9.1.4 in /misc/ngseq8/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages (from -r requirements.txt (line 7)) (0.14.1)
Requirement already satisfied: svgwrite>=1.1.6 in /misc/ngseq8/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages (from -r requirements.txt (line 8)) (1.3.1)
Requirement already satisfied: numpy>=1.11.1 in /misc/ngseq8/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages (from -r requirements.txt (line 9)) (1.13.3)
Requirement already satisfied: six in /misc/ngseq8/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages (from pyfaidx>=0.2.7->-r requirements.txt (line 5)) (1.11.0)
Requirement already satisfied: setuptools>=0.7 in /misc/ngseq8/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages (from pyfaidx>=0.2.7->-r requirements.txt (line 5)) (39.2.0)
Requirement already satisfied: pandas>=0.21 in /misc/ngseq8/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages (from statsmodels>=0.6.1->-r requirements.txt (line 6)) (0.24.2)
Requirement already satisfied: patsy>=0.5 in /misc/ngseq8/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages (from statsmodels>=0.6.1->-r requirements.txt (line 6)) (0.5.1)
Requirement already satisfied: scipy>=1.0 in /misc/ngseq8/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages (from statsmodels>=0.6.1->-r requirements.txt (line 6)) (1.1.0)
Requirement already satisfied: pyparsing>=2.0.1 in /misc/ngseq8/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages (from svgwrite>=1.1.6->-r requirements.txt (line 8)) (2.2.0)
Requirement already satisfied: pytz>=2011k in /misc/ngseq8/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages (from pandas>=0.21->statsmodels>=0.6.1->-r requirements.txt (line 6)) (2018.4)
Requirement already satisfied: python-dateutil>=2.5.0 in /misc/ngseq8/packages/Dev/Python2/2.7.13/lib/python2.7/site-packages (from pandas>=0.21->statsmodels>=0.6.1->-r requirements.txt (line 6)) (2.7.3)