Output rRNA features to a fasta file

[ctSkennerton]

A new option is added for an output file that will print the
identified rRNA features. To add this functionality additional code
was required to save the results of nhmmer as Bio::SeqFeature::Generic
objects so that they can be properly printed.

This change has required the additional dependancy of some Bioperl
modules:

• Bio::SeqFeature::Generic
• Bio::Tools::GFF
• Bio::SeqIO

[r1corre]

dear developper
is the option --outfasta implemented in the 0.8 version of barrnap ?
this option is not describe in the helpfile barrnap 0.8?
thanks for your help

[ctSkennerton]

This has not been merged into the code base by @tseemann

If you want this feature now, you can download barrnap from my branch

[r1corre]

Thanks a lot for tout answer. Erwan Le 7 juil. 2017 9:58 PM, "Connor T. Skennerton" <notifications@github.com> a écrit :

…

This has not been merged into the code base by @tseemann <https://github.com/tseemann> If you want this feature now, you can download barrnap from my branch — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#8 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/ASdDf0WX2ML94g4zBsK2xmdxmK56BBVbks5sLo3dgaJpZM4FKOTg> .

[r1corre]

...for your answer. (Damn automatic correction) Le 7 juil. 2017 10:34 PM, "Erwan Corre" <r1corre@gmail.com> a écrit :

…

Thanks a lot for tout answer. Erwan Le 7 juil. 2017 9:58 PM, "Connor T. Skennerton" ***@***.***> a écrit : > This has not been merged into the code base by @tseemann > <https://github.com/tseemann> > > If you want this feature now, you can download barrnap from my branch > > — > You are receiving this because you are subscribed to this thread. > Reply to this email directly, view it on GitHub > <#8 (comment)>, or mute > the thread > <https://github.com/notifications/unsubscribe-auth/ASdDf0WX2ML94g4zBsK2xmdxmK56BBVbks5sLo3dgaJpZM4FKOTg> > . >