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31 Open 26 Closed
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Issues list

could we use it to genrate a .txt file which listed different rRNA in different genomes?
#69 opened Jul 12, 2024 by yuanping-Zhou
Bug getfasta with --outseq
#68 opened Feb 9, 2024 by johanzi
1
Error: Invalid alphabet type in target for nhmmer.
#66 opened Jun 28, 2023 by theo-allnutt-bioinformatics
SILVA version?
#65 opened Apr 12, 2023 by Unaimend
1
Building eukaryotic rrna operon database
#63 opened Mar 27, 2022 by DeniRibicic
barrnap
#62 opened Mar 24, 2022 by 473021677
barrnap doesn't create any output
#61 opened Mar 24, 2022 by neelam19051
Fail if Bedtools issues a fasta normalization error
#60 opened Aug 17, 2021 by jdwinkler-lanzatech
barrnap-v0.9 debian package has incomplete database
#59 opened Aug 2, 2021 by thackl
2
please add option to force overwrite .fai index during, or automatically delete fai file after barrnap run
#58 opened May 14, 2021 by jvollme
calling two overlapping sequences separate partial 16S sequences
#57 opened May 4, 2021 by ileleiwi
[barrnap] ERROR: nhmmer failed to run
#55 opened Jan 29, 2021 by nick-youngblut
3
nhmmer failed to run - Error: Invalid alphabet type in target for nhmmer. Expect DNA or RNA
#54 opened Jan 16, 2021 by minjinhan
7
GFF output and Fasta-headers give different start-coordinates of rRNA-genes
#53 opened Jan 13, 2021 by jvollme
Cannot specify a file on cmdline?
#52 opened Jan 7, 2021 by wwood
Adding fungal HMM
#48 opened Dec 14, 2020 by danwiththeplan
4
Overlapping 5.8S and 28S annotations in Eukaryotic rDNAs
#47 opened Nov 17, 2020 by BartvdVossenberg
4
possible option for "prokaryotic" search (archaeal + procaryotic)?
#46 opened Nov 6, 2020 by jvollme
Could the barrnap be used to predict the rrna of *.fna.gz file?
#45 opened Oct 7, 2020 by YulinzhangSia
1
Can not find required 'nhmmer'
#44 opened Sep 5, 2020 by Lcornet
1
What does column 8 stand for?
#43 opened Aug 19, 2020 by roey-angel
Add --slow/--accurate mode that uses RFAM/Infernal enhancement
#39 opened Oct 20, 2019 by tseemann
@tseemann
Error: Cannot write foo.fa.fai index bug
#38 opened Oct 17, 2019 by tseemann
@tseemann
Mycobacteria & 5S rRNA
#36 opened Apr 5, 2019 by ppgardne
archaea and bacteria 16S duplicate
#35 opened Feb 11, 2019 by chloelulu
@tseemann
1
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