Parsimoniously explain direct reversions #776
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Insert a new node to avoid A->B->A mutation transitions along inheritance paths.
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Does this happen along a single (non-bifurcating) chain of edges. That would seem weird. |
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@@ Coverage Diff @@
## main #776 +/- ##
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+ Coverage 93.55% 93.59% +0.04%
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Files 17 17
Lines 5538 5622 +84
Branches 1019 1042 +23
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+ Hits 5181 5262 +81
- Misses 235 237 +2
- Partials 122 123 +1
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Happens quite a lot when you have sequences that are sampled close together in time, and you happen to sample one that has an extra mutation a day earlier. |
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Insert a new node to avoid A->B->A mutation transitions along inheritance paths.