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@tskit-dev

Tskit developers

Software for the creation and analysis of tree-sequences.

Popular repositories

  1. msprime Public

    Simulate genealogical trees and genomic sequence data using population genetic models

    Python 121 68

  2. tskit Public

    Analyse, create and manipulate tree sequences.

    Python 70 44

  3. tsinfer Public

    Infer a tree sequence from genetic variation data.

    Python 27 9

  4. pyslim Public

    Tools for dealing with tree sequences coming to and from SLiM.

    Python 15 16

  5. A set of tutorials for msprime and tskit.

    Jupyter Notebook 8 10

  6. tsdate Public

    Infer the age of ancestral nodes in a tree sequence.

    Python 7 4

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