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demo data: example output files #19

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dlemas opened this issue May 16, 2022 · 2 comments
Closed

demo data: example output files #19

dlemas opened this issue May 16, 2022 · 2 comments

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@dlemas
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dlemas commented May 16, 2022

We have worked to get CAMP running on our local cluster, and I have successfully run predict_CAMP.py on the example_data.csv. This produced 3 npy files and I could not find documentation explaining the output and interpretation of results. @twopin-can you push the example data output files to the repo and provide more documentation on how to interpret the CAMP output?

@twopin
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twopin commented Jun 22, 2022

Actually the predicted interacting score is stored in 'pred_label', and the corresponding encoded AA sequences can be found in ‘pep_sequence’ and 'prot_sequence'.

@twopin twopin closed this as completed Jun 22, 2022
@dlemas
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dlemas commented Jun 30, 2022

Where are these files located? I am specifically referring to files located in: ~/CAMP/example_prediction/

  • bs_pred_test.npy
  • bs_test_peptide.npy
  • bs_test_protein.npy

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