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GVF header not formatted correctly #629

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zhuchcn opened this issue Dec 16, 2022 · 0 comments · Fixed by #631
Closed

GVF header not formatted correctly #629

zhuchcn opened this issue Dec 16, 2022 · 0 comments · Fixed by #631

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@zhuchcn
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zhuchcn commented Dec 16, 2022

The CHROM description is not formatted correctly.

##fileformat=VCFv4.2
##mopepgen_version=0.1.0-beta.1
##parser=parseVEP
##reference_index=/data/Index/GRCh38-EBI-GENCODE34
##genome_fasta=
##annotation_gtf=
##source=gsnp
##CHROM=<Description='{'Description': "'Gene ID'"}'>
##INFO=<ID=TRANSCRIPT_ID,Number=1,Type=String,Description="Transcript ID">
##INFO=<ID=GENE_SYMBOL,Number=1,Type=String,Description="Gene Symbol">
##INFO=<ID=GENOMIC_POSITION,Number=1,Type=String,Description="Genomic Position">
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fix (GVFMetadata): attribute CHROM to read in correctly uclahs-cds/package-moPepGen
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@zhuchcn