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I wonder about the TMT part, cuz that would create variant interactions that should not be present in any sample. I havn't tried this but it sounds safer to do sample specific databases, and then do a "combineFASTA" to create a database for the entire plex? sounds like a to-do for MPG
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zhuchcn
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Add CLI command combineFasta to combine variant peptides called from different samples
Add CLI command mergeFasta to combine variant peptides called from different samples
Feb 8, 2022
I wonder about the TMT part, cuz that would create variant interactions that should not be present in any sample. I havn't tried this but it sounds safer to do sample specific databases, and then do a "combineFASTA" to create a database for the entire plex? sounds like a to-do for MPG
Originally posted by @lydiayliu in uclahs-cds/pipeline-call-NonCanonicalPeptide#4 (comment)
The text was updated successfully, but these errors were encountered: