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dbSnpDetails.as
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dbSnpDetails.as
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table dbSnpDetails
"dbSNP annotations that are too lengthy to include in bigDbSnp file; for variant details page"
(
string name; "rs# ID of variant"
int freqSourceCount; "Number of frequency sources"
string[freqSourceCount] alleleCounts; "Array of each source's |-sep list of allele:count"
int[freqSourceCount] alleleTotals; "Array of each source's total number of chromosomes sampled; may be > sum of observed counts and differ across variants."
int soTermCount; "Number of distinct SO terms annotated on variant"
int[soTermCount] soTerms; "SO term numbers annotated on RefSeq transcripts"
int clinVarCount; "Number of ClinVar accessions associated with variant"
string[clinVarCount] clinVarAccs; "ClinVar accessions associated with variant"
string[clinVarCount] clinVarSigs; "ClinVar significance for each accession"
int submitterCount; "Number of organizations/projects that reported variant"
string[submitterCount] submitters; "dbSNP 'handles' of submitting orgs/projects"
int pubMedIdCount; "Number of PubMed-indexed publications associated with variant"
int [pubMedIdCount]pubMedIds; "PMIDs of associated publications"
)