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xena gene page #135
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I would like to work on this issue. Can you give me more information? |
@NikolayOG suggestion: first know how to use the xena browser app, pull up "TCGA Pan-Cancer (PANCAN)" cohort, add three columns: gene expression, somatic mutation and phenotype/primary disease columns. The goal is that an url https://xenabrowser.net/heatmap/?gene=TP53 will automatically give this view below: We will hard-code the cohort, default gene expression, and default somatic mutation dataset, and default phenotype data parameters. |
I am sorry about the long delay it was due to personal matter. The way I
see the project : "Explore new method of visualization pathway
perturbation" is that I have to analyze and compare DNA data from healthy
people and people with caner. See which part of the DNA is possible
causation for cancer taking into account the noise in the data. Then see
for which protein is that DNA part responsible for. Then see in which
pathway is this protein and visualize that.
2017-03-05 23:54 GMT+00:00 jingchunzhu <notifications@github.com>:
… suggestion: first know how to use the xena browser app, pull up "TCGA
Pan-Cancer (PANCAN)" cohort, add three columns: gene expression, somatic
mutation and phenotype/primary disease columns.
The goal is that an url https://xenabrowser.net/heatmap/?gene=TP53 will
automatically give this view below
<https://xenabrowser.net/heatmap/?bookmark=2a4299d9899031787098f4e789d4c319>
:
[image: image]
<https://cloud.githubusercontent.com/assets/999493/23592808/0f7dbefa-01bb-11e7-8640-6ecc65587a35.png>
We will hard-code the cohort, default gene expression, and default somatic
mutation dataset, and default phenotype data parameters.
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