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Updates for WCOSS2 TDS (Acorn) #810

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DusanJovic-NOAA opened this issue Sep 16, 2021 · 3 comments
Closed

Updates for WCOSS2 TDS (Acorn) #810

DusanJovic-NOAA opened this issue Sep 16, 2021 · 3 comments

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@DusanJovic-NOAA
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Minor updates in the build system are required on Acorn. Primarily updates in modulefiles. Regression test is also updated.

See PR #809
@DusanJovic-NOAA DusanJovic-NOAA mentioned this issue Sep 16, 2021
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@DusanJovic-NOAA
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Regression test on Acorn skips the following tests:

  1. All tests using WW3. WW3 does not support wcoss2 platform yet.
  2. All tests using parallel netcdf output
  3. cpld_decomp and control_fhzero do not reproduce the baselines.

@DusanJovic-NOAA
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This is the error from one of the tests using parallel netcdf:

 in fcst,init total time:    5.45701398799974     
 in fcst run phase 2, na=           0
ADIOI_CRAY_WRITECONTIG(243): filename='dynf000.nc'  error='Bad address'  errno=14  PE=00060  W_rec=00001  off=0000000000  len=0000000676  See MPICH_MPIIO_ABORT_ON_RW_ERROR.
MPICH ERROR [Rank 61] [job id a8b8f7eb-c772-4102-8ad9-f8b068e8bd99] [Wed Sep  1 22:51:03 2021] [nid001003] - MPICH ERROR [Rank 62] [job id a8b8f7eb-c772-4102-8ad9-f8b068e8bd99] [Wed Sep  1 22:51:03 2021] [nid001003] - Abort(137929743) (rank 62 in comm 0): Fatal error in MPIR_CRAY_Bcast_Tree: Other MPI error, error stack:
MPIR_CRAY_Bcast_Tree(183): message sizes do not match across processes in the collective routine: Received -32766 but expected 1

aborting job:
Fatal error in MPIR_CRAY_Bcast_Tree: Other MPI error, error stack:
MPIR_CRAY_Bcast_Tree(183): message sizes do not match across processes in the collective routine: Received -32766 but expected 1
MPICH ERROR [Rank 64] [job id a8b8f7eb-c772-4102-8ad9-f8b068e8bd99] [Wed Sep  1 22:51:03 2021] [nid001003] - Abort(137929743) (rank 64 in comm 0): Fatal error in MPIR_CRAY_Bcast_Tree: Other MPI error, error stack:
MPIR_CRAY_Bcast_Tree(183): message sizes do not match across processes in the collective routine: Received -32766 but expected 1

@junwang-noaa
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Ben created an new issue #1116 to port ufs-weather-model to wcoss2 (cactus/dogwood), let's close this one.

epic-cicd-jenkins pushed a commit that referenced this issue Apr 17, 2023
@chan-hoo
Remove wcoss_dell_p3 from workflow (#810)
ce3c9b4 
* remove wcoss_dell_p3

* remove block for tide and gyre
epic-cicd-jenkins pushed a commit that referenced this issue Apr 17, 2023
@danielabdi-noaa @chan-hoo @mkavulich
[develop]: Use yaml format for specifying experiment parameters (#778)
3c0e7e0 
* Construct var_defns components from dictionary.

* Bring back config_defaults.yaml

* Add support for sourcing yaml file into shell script.

* Remove newline for printing config, json config fix.

* Make QUILTING a sub-dictionary in predef_grids

* Reorganize config_defaults.yaml by task and feature.

* Bug fix with QUILTING=true.

* Structure a dictionary based on a template dictionary.

* Convert all WE2E config files to yaml.

* Take care of problematic chars when converting to shell string.

* Process only selected keys of config.

* Add symlinked yaml config files.

* Actually use yaml config files for WE2E tests.

* Delete all shell WE2E configs.

* Don't check for single quotes in test description.

* Make WE2E work with yaml configs.

* Make yaml default config format.

* Bug fix in run_WE2E script.

* Add utility to check validity of yaml config file.

* Add config utility interface in ush directory.

* Remove unused check_expt_config_vars script.

* Add description to default config.

* Reorganize source_config.

* Add XML as one of the config formats.

* Update custom_ESGgrid config.

* Bug fix due to update.

* Change ensemble seed.

* Change POST_OUTPUT group due to merge.

* Make xml and ini configs work.

* Maintain config structure down to var_defns.

* Add function to load structured shell config, put description under metadata

* Flatten dicts before importing env now that shell config is structured.

* Support python regex for selecting dict keys.

* Add capability of sourcing task specific portion of config file.

* Access var_defns via env variable.

* Make names of tasks consistent with ex- and j- job script names.

* Append pid to temp file.

* Prettify user config, don't use " in xml texts.

* Compare timestamp of csv vs all files instead of directory.

* Fixes for some pylint suggestions.

* Convert new configs to yaml.

* Format python files with black (no functional change).

* More readable yaml/json formats by using more data types.
Only datetime type is now in quotes.

* More readable yaml config files for WE2E and default configs.

* Make config_defaults itself more readable.

* Correct pyyaml list indentation issue.

* Fix indentation in all config files.

* Use unquoted WTIME in config_defaults

* Cosmotic changes.

* Fix due to merge.

* Make __init__.py clearer.

* Fixes due to merge.

* Minor edits of comments.

* Remove wcoss_dell_p3 from workflow (#810)

* remove wcoss_dell_p3

* remove block for tide and gyre

* Replace deprecated NCAR python environment with conda on Cheyenne (#812)

* Fix issue on get_extrn_lbcs when FCST_LEN_HRS>=40 with netcdf (#814)

* activate b file on hpss for >40h

* add a new we2e test for fcst_len_hrs>40

* reduce fcst time for we2e

* Convert new test case to yaml.

* Fix formatting due to merge.

* Convert new test case to yaml.

* Fix unittest.

* Merge develop

* Remove exception logic from __init__.py

* Minor change to cmd concat.

* Make grid gen methods return dictionary, simplifis code a lot.

* Add a comment why we are suppressing yaml import exception.

* Minor change to beautify unittest output.

* Add status badge for functional tests.

* Reorder tasks in config_default and we2e test cases to match order in FV3LAM.xml

* Keep single quotes and newlines in we2e test description.

* Revert back to not rounding to 10 digits

Co-authored-by: Chan-Hoo.Jeon-NOAA <60152248+chan-hoo@users.noreply.github.com>
Co-authored-by: Michael Kavulich <kavulich@ucar.edu>
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Update build system and regression testing on Acorn DusanJovic-NOAA/ufs-weather-model
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@junwang-noaa @DusanJovic-NOAA