a ruby based version of kmer iterations and kmer graph preparation

[ghost]

def kmers(sequence, kmer)
=BEGIN
#!/usr/bin/ruby
#Universitat Potsdam
#Date: 2024-3-15
#Author: Gaurav Sablok
=END
seqsplitter = sequence.split(//)
kmeriter = kmer.to_i
seqkmers = []
for i in 0..seqsplitter.length-kmeriter
seqkmers.push(seqsplitter.slice(i,i-i+kmeriter).join)
end
return seqkmers.each { | iter | puts iter.to_s + "\t" + seqkmers.count(iter).to_s }
end

[torognes]

Sorry, but this does not seem relevant.

[ghost]

@torognes thats ok. I thought of completing it with a ruby version so that users if they are working with ruby can have both. If it doesnt seems like including the same in the same repository that makes sense and i already opened a new repository for the same. lets see if we can put something together. Have a nice week, Gaurav

[torognes]

Thanks. I think it would be better to make a ruby version in a separate repo. Best wishes

[ghost]

@torognes yes i already did it and you can find it here. May be we can link it together so that we can point the resources to each other. here is the link if you would like to host the same. I have already hosted yours. https://github.com/sablokgaurav/kmerstring-count-graph

enjoy the evening, Gaurav